Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00677 ATGAAGAACTTGTACTGGTTTAAAGAAATTTCTAACAACGTGAGATCAGGGAGAAGGCTGTCACTTGGGGAGTATAAGCGAGCAGTGTCATGGTCCAAGTATTTGATCTCTTCTGGGGCAGCCATAAAGGGAGAGGCTGAACAAGAATGGAGTGCTGATCTGTCTCAGTTGTTCATTGGGTCCAAGTTTGCTTCTGGGAGGCATAGCAGGATCTACAGAGGCATCTACAAGCACATGGACGTTGCAATTAAGCTGGTGAGTCAACCGGAGGAGGATGAGGACTTGGCTGTTTCGCTTGAGCAGCAATTCACTTCTGAGGTTAATTTGCTCTTTCGTTTGCGCCACCCAAATATCATCACCTTTGTTGCAGCTTGCAAGAAACCTCCTGTGTTCTGCATTATTACTGAATATTTGGCCGGGGGTTCCTTGAGAAAATACTTGATTCAGGAAGGACCACATTCGGTTCCTCACAACGTTGTTCTGAAATTAGCCTTAGACATTGCTCGGGGAATGCAATATCTTCATTCTCAGGGTATACTACACAGGGATCTCAAATCAGAAAACCTGCTGTTGGGGGAAGATTTGAGCGCAAAAGTAGCAGATTTTGGGATCTCATGCTTGGAATCTCAGACTGGTAGTGCAAAAGGATTCACTGGAACATACCGTTGGATGGCACCTGAAATGATCAAAGAAAAGCGTCACACGAAAAAAGTAGATGTCTATAGTTTCGCCATAGTTCTATGGGAACTCCTAACAGGATTGACCCCATTTGACAACATGACACCAGAGCAGGCAGCATATGCAGCCACTCACAAGAGCATGTGGCATGCCTACCATACACCCTTGCTTATCAAAGCAAGACACCTCATCGACAATATTATATTACCCAAAGCTATACACTTCTATATTAAGCTTTACAACATTCAAGATTCGAATGAAAGGCCTCCGTTACCATGTGAGTGTCCACGGGCATTTAGTCATCTGATAAACAGATGCTGGTCAAGCAATCCAGATAAAAGACCACATTTTGATGAGATAGTTGCAATTTTGGAGAGCTATAGTGAAGCACTGGAGGAGGATCCACAGTTTTTAACTACTTACAAACCACGTCCTAATAATCTTATTCTCAGATGCTTACCCAAATGTAATACTACTGCCAATGTATCTGCTTCTACCAAACCTTAA 1185 0.4321 MKNLYWFKEISNNVRSGRRLSLGEYKRAVSWSKYLISSGAAIKGEAEQEWSADLSQLFIGSKFASGRHSRIYRGIYKHMDVAIKLVSQPEEDEDLAVSLEQQFTSEVNLLFRLRHPNIITFVAACKKPPVFCIITEYLAGGSLRKYLIQEGPHSVPHNVVLKLALDIARGMQYLHSQGILHRDLKSENLLLGEDLSAKVADFGISCLESQTGSAKGFTGTYRWMAPEMIKEKRHTKKVDVYSFAIVLWELLTGLTPFDNMTPEQAAYAATHKSMWHAYHTPLLIKARHLIDNIILPKAIHFYIKLYNIQDSNERPPLPCECPRAFSHLINRCWSSNPDKRPHFDEIVAILESYSEALEEDPQFLTTYKPRPNNLILRCLPKCNTTANVSASTKP 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00677 394 Gene3D Transferase(Phosphotransferase) domain 1 139 377 - -
Vimu7g00677 394 Pfam Protein kinase domain 65 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g00677 394 PRINTS Tyrosine kinase catalytic domain signature 219 229 IPR001245 GO:0004672|GO:0006468
Vimu7g00677 394 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672|GO:0006468
Vimu7g00677 394 PRINTS Tyrosine kinase catalytic domain signature 238 260 IPR001245 GO:0004672|GO:0006468
Vimu7g00677 394 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672|GO:0006468
Vimu7g00677 394 SUPERFAMILY Protein kinase-like (PK-like) 49 365 IPR011009 -
Vimu7g00677 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Vimu7g00677 394 PIRSF ILK 305 369 - -
Vimu7g00677 394 PIRSF ILK 37 291 - -
Vimu7g00677 394 ProSiteProfiles Protein kinase domain profile. 57 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g00677 394 SMART serkin_6 57 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g00677 394 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 50 355 - -
Vimu7g00677 394 FunFam Serine/threonine-protein kinase isoform 1 47 139 - -
Vimu7g00677 394 CDD STKc_MAP3K-like 64 350 - -
Vimu7g00677 394 Gene3D Phosphorylase Kinase; domain 1 46 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00677 Vimu-Chr7 6748155 6750564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00677 30 359 MAP Kinase Kinase Kinase AT1G62400 56.587 3.33e-128 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vimu7g00677 Pkinase 6.3e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00677 - - gmx:100785212 646.351