Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00675 ATGGAAGCTTATGAGAACGAATCGAAGAAAGGGTTCTGGAATGCGGAGGAAGACTCAGTTCTAACTAAATACGTGAAAAAGCATGGAACTGGGAAGTGGAACCGGATTCCTAAAGTGACAGGGTTGAAGAGAAGCGGCAAAAGTTGCAGACTGAGATGGATGAATTATCTAACTCCCGATGTTAAGCGTGGAGATTTCTCAGAAGAAGAAGAAGACCTTGTTGTTCGGCTTCACAGTCTCCTTGGAAATAGGTGGTCTTTGATTGCGGGGAGGATTCCGGGGAGAACAGACAACCAGGTGAAGAACTTTTGGAACACTCATTTAAGCAAGAAGCTTGGTGTTGTTGATAAGAAGAAAAAGAGAAAAGCTTGTGGTGGAGTTGAAGCTGAGGGTGATTGCAACAGTGCATCATCAAAGGAGAGGAGTGGCGAAGGTGAGAAGCTTCTCCATGAAAGTTGGAGTGATGATCTGATGGAGTTGGGAAACATGCATGAGGAGATTATGAGAGATGATTTTGGATGTAGCTTTTCTTTTCCTAATAGTCTGTTCGATCTCTGCACTTCTCCTTACTACACTCAATCTTTTCACCACTCTTTCTTTGCCCTTTGA 609 0.4351 MEAYENESKKGFWNAEEDSVLTKYVKKHGTGKWNRIPKVTGLKRSGKSCRLRWMNYLTPDVKRGDFSEEEEDLVVRLHSLLGNRWSLIAGRIPGRTDNQVKNFWNTHLSKKLGVVDKKKKRKACGGVEAEGDCNSASSKERSGEGEKLLHESWSDDLMELGNMHEEIMRDDFGCSFSFPNSLFDLCTSPYYTQSFHHSFFAL 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00675 202 SUPERFAMILY Homeodomain-like 8 104 IPR009057 -
Vimu7g00675 202 Gene3D - 10 62 - -
Vimu7g00675 202 FunFam Transcription factor WER 64 135 - -
Vimu7g00675 202 Gene3D - 65 130 - -
Vimu7g00675 202 CDD SANT 66 108 IPR001005 -
Vimu7g00675 202 CDD SANT 13 57 IPR001005 -
Vimu7g00675 202 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Vimu7g00675 202 FunFam MYB-related transcription factor 9 62 - -
Vimu7g00675 202 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Vimu7g00675 202 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 57 IPR017930 -
Vimu7g00675 202 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Vimu7g00675 202 Pfam Myb-like DNA-binding domain 63 108 IPR001005 -
Vimu7g00675 202 Pfam Myb-like DNA-binding domain 11 57 IPR001005 -
Vimu7g00675 202 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 137 - -
Vimu7g00675 202 SMART sant 62 110 IPR001005 -
Vimu7g00675 202 SMART sant 9 59 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00675 Vimu-Chr7 6729198 6729959 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00675 5 143 MYB Transcription Factor Family AT5G40330 63.194 7.38e-62 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu7g00675 Myb_DNA-binding 8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00675 K09422 - cave:132175782 192.586