Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00660 ATGGACATTCAAGGTAACCTCACAGAAAACTATGCCTCGCAGCCAATGCATGCGCAAGAAAACTGCCTGAAACCCAGCATGGGGGATCAGCTTCCTTTTGGAGTTCCTTCCTCACATGGTTTCTTGCAAGATTTTCATCATATTGATCACTTTCCTGTGAATGATGGCTCCTCATCCAATCCCATTTTCGGGGTACATACTCCAAATTTTGATCCCTTTGATCACAATGTAAACTGTGAGTCTGCACCTCCTGAATTTGAAGTTTTTGAGTGCAAGCCTTTTGCTGAGAGCAATGGTAGTGCACATGCTCATCTGATGCACAATTTCCAATATGTAGGTTATAGTTTGAACCTTCCTCGGACGAATCAACTGGATATGGTGGTGGCAAACCAGAGATTCCTGCCCTTCAGTGCTCTAGAAACGAAACCTTTGAATTTTGTTGCACCAGATGAGATCTCATGCATAACCCCACCTAATTTTTATAAGAAAGTTGGTTTGAATAAAAACCTTAGGGAATCCCCTAGCACTAGGAGAACATTCAAAGCTCGGAAGAAATCCAACACAGTGAAGGGGCAATGGACATCAGATGAAGACAGTTTCTGTTGGAAAAACCACATACTGCTTTCCATAAACAGATTGTTGATTCAACTGGTCGACCAATATGGAGTGAGGAAATGGTCACACATAGCTCAGGCGTTGCCTGGGAGAATAGGGAAACAATGCAGAGAACGATGGCATAACCATTTAAGGCCAGACATTAAGAAGGATATATGGACTGAAGAAGAGGATAAAATACTGATCCAAGCTCATGCAGAGATAGGAAATAAGTGGGCAGAGATTGCAAAAAAGTTGCCTGGAAGAACTGAGAACTCCATCAAAAACCATTGGAACGCAACAAAGAGAAGACAATATTCCAAGAGAAAATGTCGTTCAAAGTACCCTAGAGGCTCTCTTCTTCAGGAATATATCAAGAGCTTGAACCTAGACCAAAATCCACCAATGGACTATCGAAAAAAATCTGTTAAAAATGCGAATGCAAAGATTAACAATAACGGCAAAGCAGCAGCTGAGCTCCTGTGTGGTGGGCAGTTGGTGACAAAGTATGATTTTACCGAGGTTCCAGAATTTTGTTTGGATGGTAACTTGTTTGAAGAGGGGTGTAGCATTGATTCTCTGCTAGATGATATACAAAGTGCTTCTACTATGGATGAGAAAGATTTTGATGGAAAAGTAGAATGTGCTCCTACTGTGGAGGGAAAACAATCTCATCATCACCACACTGAGATGATGGCACCAACTATGGGGATTCAAGTTAAGAAGGAACTGGATTTGGTGGAGATGATGTCACATCACGTTAATGAAAGTAGTAATATATAA 1377 0.4132 MDIQGNLTENYASQPMHAQENCLKPSMGDQLPFGVPSSHGFLQDFHHIDHFPVNDGSSSNPIFGVHTPNFDPFDHNVNCESAPPEFEVFECKPFAESNGSAHAHLMHNFQYVGYSLNLPRTNQLDMVVANQRFLPFSALETKPLNFVAPDEISCITPPNFYKKVGLNKNLRESPSTRRTFKARKKSNTVKGQWTSDEDSFCWKNHILLSINRLLIQLVDQYGVRKWSHIAQALPGRIGKQCRERWHNHLRPDIKKDIWTEEEDKILIQAHAEIGNKWAEIAKKLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGSLLQEYIKSLNLDQNPPMDYRKKSVKNANAKINNNGKAAAELLCGGQLVTKYDFTEVPEFCLDGNLFEEGCSIDSLLDDIQSASTMDEKDFDGKVECAPTVEGKQSHHHHTEMMAPTMGIQVKKELDLVEMMSHHVNESSNI 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00660 458 FunFam Transcription factor MYB119 256 320 - -
Vimu7g00660 458 ProSiteProfiles Myb-like domain profile. 250 300 IPR001005 -
Vimu7g00660 458 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 185 249 IPR017930 -
Vimu7g00660 458 Pfam Myb-like DNA-binding domain 212 255 - -
Vimu7g00660 458 Gene3D - 189 255 - -
Vimu7g00660 458 CDD SANT 193 249 IPR001005 -
Vimu7g00660 458 ProSiteProfiles Myb-like domain profile. 185 249 IPR001005 -
Vimu7g00660 458 FunFam Transcriptional activator Myb isoform A 189 255 - -
Vimu7g00660 458 SUPERFAMILY Homeodomain-like 229 308 IPR009057 -
Vimu7g00660 458 CDD SANT 258 300 IPR001005 -
Vimu7g00660 458 Gene3D - 256 318 - -
Vimu7g00660 458 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 250 304 IPR017930 -
Vimu7g00660 458 PANTHER MYB PROTEIN-RELATED 175 344 - -
Vimu7g00660 458 SMART sant 189 251 IPR001005 -
Vimu7g00660 458 SMART sant 254 302 IPR001005 -
Vimu7g00660 458 Pfam Myb-like DNA-binding domain 258 297 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00660 Vimu-Chr7 6605536 6607178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00660 61 396 MYB Transcription Factor Family AT4G18770 46.649 7.99e-91 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu7g00660 Myb_DNA-binding 5.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00660 K09422 - gmx:100816653 732.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00660 7 6605536 6607178 Vimu10g01243 10 12469931 12472098 ECH
Vimu7g00660 7 6605536 6607178 Vimu7g00660 7 6605536 6607178 ECH
Vimu7g00660 7 6605536 6607178 Vimu10g01243 10 12469931 12472098 PCT