Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00638 ATGCCTGTAAATCCATGGACCCTCTTCTTCTTATGCGTTTCCCTTATGCTCCCACTCCATTTTCTCACAGCTGCTGCAGTGAACCAACAAGGGGAGGCTCTTCTATCATGGAGGAGAACCCTGAACGGGTCCCTGGAGGTATTGAGTAACTGGGACCCAGTTCAAGACACCCCATGTAGCTGGTATGGAGTGAGTTGCAACACGAAGAACGAAGTAGTACAGCTGGATCTGAGGTATGTGGATTTGCTTGGAAGACTGCCCAGTGATTTCACCTCATTGCTTTCCTTAAGCAGTCTGATCTTAGCCGGAACCAATCTCACGGGTTCAATTCCAAAAGAAATAGGTTACCTTGTGGAACTCAGCTACTTGGACTTAAGTGACAATGCCTTGAGTGGCGAAATACCAAGTGAGCTATGTTACTTGCCTAAACTTGAGGAACTTCATCTCAACTCCAATGACCTCGTGGGGTCCATTCCAGTTGCAATTGGAAACCTCACAAAGTTGCAGAAGCTGATCCTATATGACAACCAACTCAGCGGGGAAATTCCTACCACCATCGGCAACCTTAAGAACCTTCAAGTGATAAGAGCAGGAGGAAACAAGAACTTGGAGGGTCCTCTACCACAAGAAATTGGCAACTGTTCCAGTTTAGTGATGTTGGGTCTTGCTGAAACAAGCCTCTCAGGTTTTCTGCCACCAACTCTTGGCCTTCTGAAAAACCTTGAAACCATTGCCATTTACACTTCCTTACTCTCCGGTGAAATACCAACTGAACTTGGGGACTGCACAGGACTCCAAAACATTTACCTTTACGAGAACTCTCTCACTGGATCCATACCAAGCAAGTTGGGAAACCTTAAGAATCTCGAAAACCTTCTACTGTGGCAGAACAACCTAGTTGGTACCTTGCCCCCCGAGATTGGCAACTGTGAGCAGTTGTCAGTGATTGACGTGTCAATGAACTCACTAACCGGAAGCATTCCCAACACTTTCGGGAACTTGACATCATTGCAAGAGCTCCAACTCAGTGTAAACCAGATTTCGGGGGAGATTCCTGGAGAACTGGGGAAGTGTCAGCAACTCACGCATGTGGAGCTTGACAACAATCTCATCACTGGTACCATACCTTCCGAATTAGGAAACCTTGCTAATTTAACGCTCTTGTTCTTATGGCACAACAAGCTGCAAGGTAACATTCCCTCTTCTCTTTCCAATTGTCAAAACCTAGAGGCTATTGATCTGTCACAGAATGGATTAACGGGTCCCATACCCAAGGGGATATTCCAGCTCAAGAATCTCAACAAGCTTTTGCTCCTATCCAATAACCTCTCAGGGAAAATTCCTTCTGAGATTGGGAATTGTTCTTCCCTAATTCGATTCCGAGCCAACGACAACAACATCACCGGGAACATTCCCTCGCAGATTGGGAATCTCAACAATTTGAATTTCCTTGACCTAGGGAATAATCGGATTTCCGGCGGCATCCCGGAGGAGATATCCGGCTGCCGGAATCTCGCATTTCTTGATATACATTCGAACTTTCTTGCCGGAAATCTACCGGAAAGTTTGAGTCGGCTTAATTCGCTTCAGTTTCTCGATGTTTCCGACAACATGATCGAAGGTATACTAAACCCCACCGTCGGCGAACTCACCGCGCTCTCCAAGCTTGTTTTGTCGAAGAATCGAATCTCCGGCTCAATTCCGAGTCAAATTGGGTCTTGTTCTAAATTACAATTACTGGATCTCAGTAGCAACAATCTCTCCGGCGAAATCCCCGGCAGTATCGGCAACATTCCGGCATTGGAAATCGCTCTGAATTTGAGCCTGAACCAACTATCCGGCGAGATCCCTCGGGAGTTCTCCGGTTTGACAAAGCTCGGAGTGCTGGACATATCTCACAACACTCTCAGCGGAAACATTCAATATCTCGCGGGTCTGCAGAATCTGGTGGTGCTCAATATCTCGAATAACAAATTCTCGGGACGAGTTCCGGACACGCCTTTCTTCGCGAAGCTGCCGCTGAGTGTGCTGGCGGGGAACCCGGCGCTGTGCTTTTCCGGCAACGAGTGCAGTGGCGACGTCGGCGGAAGGTCGGGGCGGCGTGCGAGGGTAGCGCGTGTGGCGATGGTGGTCCTGCTGTGCACCGCGTGCTTGATGCTCATGGCGGCGCTGTATGTCGTCGTCGCAGCGAAACGGCGAGGGGACCGCGAAAACGACGTGGAGCTAGATGGAAAGGACAGCGACGTGGACATGGCCCCACCTTGGGAAGTGACACTGTACCAGAAACTCGATCTGTCCATCTCTGATGTAGCTAAATGTCTCACTGCTGGCAACGTCATCGGCCAAGGCCGATCCGGCGTCGTTTATAGGGTCGAGTTGTCGAGTACGGGACTAGCCGTGGCGGTGAAGAAGTTCCGGTTGTCGGAGAAATTCTCCGCGGCGGCGTTCTCGTCGGAGATTGCCACGCTTGCGCGAATCCGTCACCGGAACATCGTGCGGCTGCTGGGTTGGGGGGCCAACAGGAGAACCAAGTTACTGTTTTACGATTATTTACCAAATGGTAACCTGGACACGCTGTTACACGAGGGGTGCACAGGATTAATTGATTGGGAGACGAGGCTCAAGATAGCGTTGGGCGTGGCTGAGGGCGTGGCTTACTTGCACCACGATTGCGTGCCTGCTATCTTGCACCGGGACGTCAAGGCGCAGAACATTTTGTTAGGAGACAGATACGAACCCTGTTTGGCGGATTTTGGTTTCGCTCGATTCGTGGAAGAGGATCACGCCTCCTTTTCGATTAATCCACATTTCGCCGGCTCCTACGGTTACATTGCTCCCGTGAAAGACATGATGGTGCCGGCAAAAAAGCCAAATGATCACGACTTTGGAGTGGTCCTACTGGAGATAATAACGGGGAAAAGGCCAGTGGATCCATCATTCCCGGATGGGCAACATGTTATTCAGTGGGTCAGGGAGAACCTCAAGAGCAAGAAGGACCCGATCCAGGTTCTAGATTCCAAGCTCCAAGGCCATCCAGACACACAAATCCAAGAGATGCTACAAGCACTTGGTATTGCCCTCTTGTGCACAAGTAATCGTGCAGAGGATCGACCGACAATGAAAGATGTTGCAGCATTATTGAGAGAAATTCGTCACGATCCTCCACCAGGCGCTGAGCCCCACAAGCCCAAACCCATAACATCTCAAGCTTCATCCTATTCCTCCTCCTCTGTCACCCCTGCTCAGTTGTTGCTCCTACAATCTACCTCCAACTCTTCCTCATCCCTTGCTTATTCCTCTTCCTCGGCAGCACCCTACCCCCCTTCAAGGAATCAATCCTCCATTCAAATTTAA 3354 0.4985 MPVNPWTLFFLCVSLMLPLHFLTAAAVNQQGEALLSWRRTLNGSLEVLSNWDPVQDTPCSWYGVSCNTKNEVVQLDLRYVDLLGRLPSDFTSLLSLSSLILAGTNLTGSIPKEIGYLVELSYLDLSDNALSGEIPSELCYLPKLEELHLNSNDLVGSIPVAIGNLTKLQKLILYDNQLSGEIPTTIGNLKNLQVIRAGGNKNLEGPLPQEIGNCSSLVMLGLAETSLSGFLPPTLGLLKNLETIAIYTSLLSGEIPTELGDCTGLQNIYLYENSLTGSIPSKLGNLKNLENLLLWQNNLVGTLPPEIGNCEQLSVIDVSMNSLTGSIPNTFGNLTSLQELQLSVNQISGEIPGELGKCQQLTHVELDNNLITGTIPSELGNLANLTLLFLWHNKLQGNIPSSLSNCQNLEAIDLSQNGLTGPIPKGIFQLKNLNKLLLLSNNLSGKIPSEIGNCSSLIRFRANDNNITGNIPSQIGNLNNLNFLDLGNNRISGGIPEEISGCRNLAFLDIHSNFLAGNLPESLSRLNSLQFLDVSDNMIEGILNPTVGELTALSKLVLSKNRISGSIPSQIGSCSKLQLLDLSSNNLSGEIPGSIGNIPALEIALNLSLNQLSGEIPREFSGLTKLGVLDISHNTLSGNIQYLAGLQNLVVLNISNNKFSGRVPDTPFFAKLPLSVLAGNPALCFSGNECSGDVGGRSGRRARVARVAMVVLLCTACLMLMAALYVVVAAKRRGDRENDVELDGKDSDVDMAPPWEVTLYQKLDLSISDVAKCLTAGNVIGQGRSGVVYRVELSSTGLAVAVKKFRLSEKFSAAAFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDYLPNGNLDTLLHEGCTGLIDWETRLKIALGVAEGVAYLHHDCVPAILHRDVKAQNILLGDRYEPCLADFGFARFVEEDHASFSINPHFAGSYGYIAPVKDMMVPAKKPNDHDFGVVLLEIITGKRPVDPSFPDGQHVIQWVRENLKSKKDPIQVLDSKLQGHPDTQIQEMLQALGIALLCTSNRAEDRPTMKDVAALLREIRHDPPPGAEPHKPKPITSQASSYSSSSVTPAQLLLLQSTSNSSSSLAYSSSSAAPYPPSRNQSSIQI 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00638 1117 SMART LRR_sd22_2 117 149 - -
Vimu7g00638 1117 SMART LRR_sd22_2 526 544 - -
Vimu7g00638 1117 SMART LRR_sd22_2 623 645 - -
Vimu7g00638 1117 SMART LRR_sd22_2 165 191 - -
Vimu7g00638 1117 SMART LRR_sd22_2 262 288 - -
Vimu7g00638 1117 SMART LRR_sd22_2 574 600 - -
Vimu7g00638 1117 SMART LRR_sd22_2 478 501 - -
Vimu7g00638 1117 SMART LRR_sd22_2 382 411 - -
Vimu7g00638 1117 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 463 1048 - -
Vimu7g00638 1117 FunFam Putative LRR receptor-like serine/threonine-protein kinase At4g26540 family 520 603 - -
Vimu7g00638 1117 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 27 200 - -
Vimu7g00638 1117 SUPERFAMILY RNI-like 316 664 - -
Vimu7g00638 1117 Gene3D Ribonuclease Inhibitor 282 361 IPR032675 -
Vimu7g00638 1117 SUPERFAMILY L domain-like 53 420 - -
Vimu7g00638 1117 ProSiteProfiles Protein kinase domain profile. 774 1047 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g00638 1117 MobiDBLite consensus disorder prediction 1093 1117 - -
Vimu7g00638 1117 SMART serkin_6 774 1047 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g00638 1117 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 201 424 - -
Vimu7g00638 1117 Gene3D Ribonuclease Inhibitor 29 179 IPR032675 -
Vimu7g00638 1117 ProSitePatterns Serine/Threonine protein kinases active-site signature. 895 907 IPR008271 GO:0004672|GO:0006468
Vimu7g00638 1117 FunFam LRR receptor-like serine/threonine-protein kinase 763 850 - -
Vimu7g00638 1117 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 425 519 - -
Vimu7g00638 1117 Pfam Protein kinase domain 777 1043 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g00638 1117 Gene3D Transferase(Phosphotransferase) domain 1 851 1056 - -
Vimu7g00638 1117 Gene3D Ribonuclease Inhibitor 604 691 IPR032675 -
Vimu7g00638 1117 Pfam Leucine Rich Repeat 576 597 IPR001611 GO:0005515
Vimu7g00638 1117 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 851 1064 - -
Vimu7g00638 1117 FunFam Putative LRR receptor-like serine/threonine-protein kinase 604 689 - -
Vimu7g00638 1117 Pfam Leucine rich repeat 312 371 IPR001611 GO:0005515
Vimu7g00638 1117 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Vimu7g00638 1117 SMART LRR_typ_2 117 141 IPR003591 -
Vimu7g00638 1117 SMART LRR_typ_2 526 549 IPR003591 -
Vimu7g00638 1117 SMART LRR_typ_2 430 454 IPR003591 -
Vimu7g00638 1117 SMART LRR_typ_2 550 574 IPR003591 -
Vimu7g00638 1117 SMART LRR_typ_2 478 502 IPR003591 -
Vimu7g00638 1117 SMART LRR_typ_2 334 358 IPR003591 -
Vimu7g00638 1117 SMART LRR_typ_2 382 406 IPR003591 -
Vimu7g00638 1117 SMART LRR_typ_2 286 310 IPR003591 -
Vimu7g00638 1117 SMART LRR_typ_2 646 679 IPR003591 -
Vimu7g00638 1117 SMART LRR_typ_2 165 189 IPR003591 -
Vimu7g00638 1117 MobiDBLite consensus disorder prediction 1051 1074 - -
Vimu7g00638 1117 ProSitePatterns Protein kinases ATP-binding region signature. 780 804 IPR017441 GO:0005524
Vimu7g00638 1117 Gene3D Ribonuclease Inhibitor 180 281 IPR032675 -
Vimu7g00638 1117 SUPERFAMILY Protein kinase-like (PK-like) 763 1049 IPR011009 -
Vimu7g00638 1117 Gene3D Ribonuclease Inhibitor 362 603 IPR032675 -
Vimu7g00638 1117 Gene3D Phosphorylase Kinase; domain 1 756 850 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00638 Vimu-Chr7 6415373 6419287 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00638 26 1052 Receptor kinase-like Gene Family AT5G56040 54.870 0.0 1088
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu7g00638 Pkinase 4.7e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00638 - - gmx:100778064 1838.54