Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00628 ATGGCATCATCCAGCTCCTACAATTCTCCATGTGCTGCCTGCAAATTCTTGAGGAGGAAATGCATGCCAGGATGCATCTTTGCGCCTTACTTCCCACCCGAAGAGCCTCAAAAATTCGCCAACGTCCACAAAATTTTTGGTGCTAGCAATGTGACCAAACTCCTGAACGAACTCCTCCCTCAGCAGAGGGAGGATGCAGTGAACTCACTAGCATATGAAGCAGAGGCACGCGTGAGGGACCCAGTTTATGGCTGCGTAGGAGCCATCTCTTTCCTGCAGAGACAAGTTCAAAGGCTCCAAAAGGAGCTTGATGCTGCAAACGCTGATCTGCTACGCTACTCTTACACTGACATCCCTCCAGCATCTCTTTCTGTGCCACCAGGACTTGCTGCATTTCAACATGTGCCCCAAAGGCAGTTTACTGCAAGATTTGGTAACGAAGGAACTGGGTTCTATCGGCAATCTACTACTACTGCTTATTCCTTTCCTTATGCCCTTCCTTGGACTGATACCTCTTCGGAGGACATCAGTGAGGGAGGAGGTGGAGGAGGTAATTTGTGA 561 0.4938 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPQQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLLRYSYTDIPPASLSVPPGLAAFQHVPQRQFTARFGNEGTGFYRQSTTTAYSFPYALPWTDTSSEDISEGGGGGGNL 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00628 186 Coils Coil 89 109 - -
Vimu7g00628 186 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Vimu7g00628 186 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Vimu7g00628 186 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00628 Vimu-Chr7 6299272 6299832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00628 2 116 AS2 family AT5G63090 90.435 1.06e-74 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu7g00628 LOB 3.1e-42 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00628 7 6299272 6299832 Vimu10g01296 10 13320097 13322823 ECH
Vimu7g00628 7 6299272 6299832 Vimu7g00628 7 6299272 6299832 ECH
Vimu7g00628 7 6299272 6299832 Vimu10g01296 10 13320097 13322823 PCT