Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00618 TTGGCCGGCTGCTGTCCAGTACTCCTTGATATAATTTGTGGTTTGGGTGTGTACGGGCCATATTGTCAACTGCATGTTTCTGTTAATTTGGGAACTAACCTTTTAGGTGTCAAGTTATATGGATTCCTGGACGTGAAGGACATTAAATGTGTGATCAATTATGACTTTCCATCAAGCCTGGAAGATTATGTACACAGAATTGGTCGAACTGGTCGTGCAGGAGCCAAAGGAACTGCTTACACATTTTTTACACACGCCAATGCCAAGTTTGCTAGGGATCTGATCAAGATTTTACAAGATGCTGGTCAGGATGTGAGTCCTGCATTGTCTGCAATGGTTCGGTCAGCTGGTTCTGGTCAATATGGATCAGGGGGAAGTTTTCGCGCAAGAGGACGTGGAGGCTATGGGAATCGAGGTTTGACATCAGGTTCCAATTCCATTCCTCTAGGTTCGAAGAGGCCTTGGCAGTATCTATAG 477 0.4507 MAGCCPVLLDIICGLGVYGPYCQLHVSVNLGTNLLGVKLYGFLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAYTFFTHANAKFARDLIKILQDAGQDVSPALSAMVRSAGSGQYGSGGSFRARGRGGYGNRGLTSGSNSIPLGSKRPWQYL 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00618 158 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 110 IPR027417 -
Vimu7g00618 158 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 43 113 - -
Vimu7g00618 158 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 43 113 IPR001650 -
Vimu7g00618 158 Gene3D - 21 116 IPR027417 -
Vimu7g00618 158 Pfam Helicase conserved C-terminal domain 43 74 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00618 Vimu-Chr7 6206296 6207416 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00618 43 94 Eukaryotic Initiation Factors Gene Family AT3G19760 48.077 3.79e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00618 K12823 - gmx:100777610 186.808