Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00617 ATGAACCCCTACGACAGTAGATACTCTGATCCCGCTTCTTTTCACACTCGTCGCAGATCTATTCCGCCGCCTTTCGGCGGTCGCGGCGACGTGGTTCCTTATGGCGTCTTTAGGTCCAATGGGTTAGGATCCGCACCCGTTGCTCCGGTTCCACCATTTGTACCCCCTCCTGGGGGTTTTAGCGTAGGACGAGGTGGTGGTAGAGTGGGCAATGGTCACGTGAGTGATAGAAAATACGACATAGGTCGCAGTGGCGGTGGAAGAGGTGGTGGTGGCGGTGGAGGCGGGGTTCACGGTTTTAGGGGCTCCAGGAGAGGAGGTAGACATGATGGTGGATCTTCTAGGGACGATTTGAACAATATTACACTTCCGAAGCAGAGTTTTAAGAATTTGGTCCCTTTTGAGAAGAATTTTTACGTTGAGTGCCCTGCGTTGAGAGCCATGTCCGAGCAAGAAGTTATGCATTACCGTGCTTCTAGAGAGATCACCGTGAATGGGCATGATGTGCCGAAACCTGTACGGATGTTCCATGAGGCGAATTTTCCTGATTATTGCCTTGAGGTCATTGCCAATCTGGGTTTTGCTGAGCCCACTCCAATTCAGGCTCAGGGTTGGCCCATGGCAATGAAGGGTAGAGATTTAATTGGCATAGCTGAGACTGGCTCGGGTAAAACTTTGGCGTATTTGCTTCCTGCATTAGTGCACGTCAATGCTCAACCTCGATTGGCACATGGTGACGGTCCCATTGTCTTAGTATTAGCACCAACGAGAGAGCTAGCTATTCAAATTCAAGAAGAGGCTCTGAAATTTGGGTCTCGAACAAATATTAGAACTACGTGCATCTATGGTGGTGCACCAAAGGGCCCCCAAATTCGCGAGCTTAGAAGAGGCGTTGAGATTGTTATTGCGACACCTGGTCGTCTAATAGATATGTTGGAAGCTCAGCACACAAACCTTCAAAGAGTGACTTACCTTGTCTTGGACGAAGCTGATCGAATGCTGGACATGGGTTTTGAACCTCAGATACGGAAAATTGTAGACCAGATTCGACCAGATAGGCAAACATTATTATGGAGTGCTACATGGCCAAGGGAGGTTGAAACTCTGGCAAGGCAATTTCTGCGCAATCCGTACAAGGTAATTATTGGGTCACCAAACCTGAAGGCAAATCAATCTATAAATCAAGTTGTTGAAGTTGTAACAGACATGGAGAAATATCATAGATTAATCAGGCTGCTGAAAGAAGTGATGGACGGGAGCCGGATTCTAATTTTTATGGAGACAAAAAAGGGATGTGATCAAGTTACTAGACAAATGAGAATGGATGGGTGGCCAGCACTATCCATCCATGGTGATAAAAACCAGGCTGAAAGGGATTGGGTCTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGGTAGGATCATCGTGTTTAGAAGCTTAGGATTTTTTATCTAG 1491 0.4715 MNPYDSRYSDPASFHTRRRSIPPPFGGRGDVVPYGVFRSNGLGSAPVAPVPPFVPPPGGFSVGRGGGRVGNGHVSDRKYDIGRSGGGRGGGGGGGGVHGFRGSRRGGRHDGGSSRDDLNNITLPKQSFKNLVPFEKNFYVECPALRAMSEQEVMHYRASREITVNGHDVPKPVRMFHEANFPDYCLEVIANLGFAEPTPIQAQGWPMAMKGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLAHGDGPIVLVLAPTRELAIQIQEEALKFGSRTNIRTTCIYGGAPKGPQIRELRRGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLLWSATWPREVETLARQFLRNPYKVIIGSPNLKANQSINQVVEVVTDMEKYHRLIRLLKEVMDGSRILIFMETKKGCDQVTRQMRMDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLGRIIVFRSLGFFI 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00617 496 Pfam Helicase conserved C-terminal domain 404 483 IPR001650 -
Vimu7g00617 496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 382 IPR027417 -
Vimu7g00617 496 Gene3D - 384 484 IPR027417 -
Vimu7g00617 496 FunFam probable ATP-dependent RNA helicase DDX17 136 383 - -
Vimu7g00617 496 MobiDBLite consensus disorder prediction 81 121 - -
Vimu7g00617 496 CDD SF2_C_DEAD 393 483 - -
Vimu7g00617 496 Gene3D - 139 383 IPR027417 -
Vimu7g00617 496 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 205 380 IPR014001 -
Vimu7g00617 496 Pfam DEAD/DEAH box helicase 198 369 IPR011545 GO:0003676|GO:0005524
Vimu7g00617 496 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 326 334 IPR000629 -
Vimu7g00617 496 CDD DEADc_DDX5_DDX17 186 380 - -
Vimu7g00617 496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 391 483 IPR027417 -
Vimu7g00617 496 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 153 483 - -
Vimu7g00617 496 SMART ultradead3 193 396 IPR014001 -
Vimu7g00617 496 MobiDBLite consensus disorder prediction 1 28 - -
Vimu7g00617 496 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 408 496 IPR001650 -
Vimu7g00617 496 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 174 202 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00617 Vimu-Chr7 6201002 6206269 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00617 171 483 Eukaryotic Initiation Factors Gene Family AT3G19760 32.588 2.40e-50 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00617 K12823 - gmx:100817092 769.229