LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu7g00614	ATGTCTCCTTCAAAAATCCCCGTCGCCGGTGAAATACCATTTTCCGGCATGCGGTTGGTTATTCTTCTTCTTCTTCAGCTCGCTGTCTTTGCGACTCCTTCACTTTGCTTGGACTTCCTATTCAACTCCTTCACAGGCATAACCAACCTCACTTTGGTGAAAGACGCTCGCGTGGACGCATCGGTCATCCGCATGACCAACGACTCCAACCAGTACTCTTATGGGCGCGTCTTCTATCCCACAAAAGTTCCCATCACAAAAACTTCTTCCAATTCCTCATCCTCATCCATCGCTTCATTCTCAACCTCTTTTGTCTTCTCCGTCTTGCCGCAAATCACTACCAGTCCCGGCTTTGGCCTCGCCTTCGTCCTCTGCAACACCACCGACCCTCCCGGAGCCCTCGCCAGCCAGTACTTCGGTCTATTCACCAACGCCACCTCCCCCACCTTTTTCCCCCTTGTCGCCGTCGAATTCGACACCGGTCAGAACCCTGAATTCAACGACATCGACGACAACCACATCGGCATCGACCTCAACAACATCGAATCCACCTTCTCCACCCCCGCCGGCTACTACAATTCCACCGGGGGGTTCGTGCCGGTGCGTATGCGAACCGGCCAGAATATCCGAGCCTGGATCGATTTTGATGGCCAGAATCTGCTGTTCAACGTAACGGTGGCGCCAATCGGCGTTTCGCGCCCGACGCAGCCTACGCTTTCACATTATGTTCCTACCATAGGTAACTACGTGTCAACTGACATGTACGTTGGGTTTTCCGCTTCCAAAACGAACTGGATCGAGGCGCAGAGGGTTCTGGCATGGAGCTTCAGCGATTCAGGGCAAGCGAGGGAGCTGAACACGACAAACTTACCGGTGTTCGAACCGGAATCGTCGACTTCCTCGCTTTCTGGCGGCGCAATAGCGGGGATTGTTGTTGGTTGTGTAGTTTTTGTGGTTATATGCGGTTGTGGTGTTTACTTATGGTGGCGAATCCAGAAAGGGAAAGACGAACAAGACGAGATCGAGGATTGGGAGTTAGAGTACTGGCCACATAGATTCTCGTACGAGGAATTGAGTTCTGCAACAGGGGAATTTGGGAAGGAGCAGCTGTTAGGTTCGGGAGGGTTCGGGAGAGTGTACAAGGGGACGTTGCCGAACAAGACACGGATTGCGGTGAAGTGTGTGAACCACGATTCGAAGCAAGGGCTGCGGGAATTCATGGCGGAGATAGAGAGTATGGGGAGGCTTCAGCACAAGAACTTGGTTCAAATGCGAGGGTGGTGTAGAAAGGGTAACGAGCTTATGCTTGTTTATGATTACATGCCTAATGGGAGTCTCAACAGGTGGGTTTTCGATCGCCCCGAGAAGCTTCTAGGGTGGGAGCAACGCCGTCGTATCCTTGTCGACGTGGCGGAGGGGCTTAACTACCTTCACCATGGTTGGGATCAGGTCGTTATTCACCGAGATATTAAGTCCAGTAACATATTATTGGACGCCGACATGCGAGGGAGACTCGGGGACTTTGGTTTGGCCAAGCTTTACACGCACGGGGAGGTTCCCAACACCACACGTGTAGTGGGGACGCTGGGTTACTTGGCGCCGGAGCTGGCCACGGTTGCGGCGCCGACGTCCGCGAGTGACGTCTACAGCTTTGGGGTGGTACTGTTGGAGGTGGCGTGCGGGAGGCGTCCCATTGAGACTTCGGTGGCAGAGGAGGAGGTGGTGCTGATTGATTGGGTGAGGGAGTTGTACGCGAAGGGGTGCGCGCGTGAGGCTGCCGATGCGAGGATCGAAGGGGAGTACGATGAGGAAGAAATGGAGATGGTTTTGAAGCTTGGCTTGGCTTGTTGCCATCCTGACCCCCAGAGGAGACCCACCATGAAGGAAGTCGTCGCGCTTCTCCTTGGAGAGAATCCGCCGGAGGCGCCCGGAAAAGTCTTGTCCGATTTGGTTCGCGGCGGCGACGATCTCGATGAGGCGGCCCCTTTACAACCCTCCTCCACGCGGGTTTGA	2013	0.5455	MSPSKIPVAGEIPFSGMRLVILLLLQLAVFATPSLCLDFLFNSFTGITNLTLVKDARVDASVIRMTNDSNQYSYGRVFYPTKVPITKTSSNSSSSSIASFSTSFVFSVLPQITTSPGFGLAFVLCNTTDPPGALASQYFGLFTNATSPTFFPLVAVEFDTGQNPEFNDIDDNHIGIDLNNIESTFSTPAGYYNSTGGFVPVRMRTGQNIRAWIDFDGQNLLFNVTVAPIGVSRPTQPTLSHYVPTIGNYVSTDMYVGFSASKTNWIEAQRVLAWSFSDSGQARELNTTNLPVFEPESSTSSLSGGAIAGIVVGCVVFVVICGCGVYLWWRIQKGKDEQDEIEDWELEYWPHRFSYEELSSATGEFGKEQLLGSGGFGRVYKGTLPNKTRIAVKCVNHDSKQGLREFMAEIESMGRLQHKNLVQMRGWCRKGNELMLVYDYMPNGSLNRWVFDRPEKLLGWEQRRRILVDVAEGLNYLHHGWDQVVIHRDIKSSNILLDADMRGRLGDFGLAKLYTHGEVPNTTRVVGTLGYLAPELATVAAPTSASDVYSFGVVLLEVACGRRPIETSVAEEEVVLIDWVRELYAKGCAREAADARIEGEYDEEEMEMVLKLGLACCHPDPQRRPTMKEVVALLLGENPPEAPGKVLSDLVRGGDDLDEAAPLQPSSTRV	670

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu7g00614	670	Gene3D	-	36	296	-	-
	Vimu7g00614	670	ProSiteProfiles	Protein kinase domain profile.	365	641	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu7g00614	670	CDD	STKc_IRAK	371	634	-	-
	Vimu7g00614	670	Pfam	Protein kinase domain	367	631	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu7g00614	670	FunFam	L-type lectin-domain containing receptor kinase S.4	35	284	-	-
	Vimu7g00614	670	ProSitePatterns	Legume lectins beta-chain signature.	154	160	IPR019825	-
	Vimu7g00614	670	FunFam	L-type lectin-domain containing receptor kinase S.4	441	645	-	-
	Vimu7g00614	670	Gene3D	Transferase(Phosphotransferase) domain 1	441	642	-	-
	Vimu7g00614	670	Pfam	Legume lectin domain	37	290	IPR001220	GO:0030246
	Vimu7g00614	670	CDD	lectin_legume_LecRK_Arcelin_ConA	37	280	IPR001220	GO:0030246
	Vimu7g00614	670	FunFam	L-type lectin-domain containing receptor kinase S.1	350	440	-	-
	Vimu7g00614	670	SMART	serkin_6	365	634	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu7g00614	670	SUPERFAMILY	Protein kinase-like (PK-like)	340	634	IPR011009	-
	Vimu7g00614	670	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	485	497	IPR008271	GO:0004672\|GO:0006468
	Vimu7g00614	670	SUPERFAMILY	Concanavalin A-like lectins/glucanases	36	293	IPR013320	-
	Vimu7g00614	670	PANTHER	-	54	638	-	-
	Vimu7g00614	670	Gene3D	Phosphorylase Kinase; domain 1	350	440	-	-
	Vimu7g00614	670	ProSitePatterns	Protein kinases ATP-binding region signature.	371	393	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu7g00614	Vimu-Chr7	6183751	6185763	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu7g00614	32	636	Receptor kinase-like Gene Family	AT1G15530	67.541	0.0	812

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vimu7g00614		Pkinase	1.2e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu7g00614	-		-	gmx:100816035	1126.31