Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00586 ATGGAGATGGAACGCGTTTTCGAATTTCCCCATTCTCATATGGATCGGCGACCGAGAAAGAGAGCGAGGTTGGGCTGGGACATTCCTGAGGTCCCTAAGGTAACGTTTCCTTTTGTCTCACAGGGTTTGTTTGACGATATTTTCTGTTTTATTGATCGGATCTCTCCACTGGAGCTCCCTTGCTTATATGTTGAATTTCTTCTTTTTGGGTTATATTCTGAGTTGGTGGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGGCTATTTCAAGCTATGCTCCTTCAAGGGGTCCCTCAGAACATACCACTTGTTCCCTATTTGTTAAGGCTGTTGCTCAAAATGGTTCTCCCCCTTGGCGAGATGATGACAAAGATGGACATTACATGTTTGCGCTTGGAGATAATTTAACTTCTCGCTATAAGATCCATAGCAAAATGGGTGAAGGAACTTTTGGACAGGTCTTAGAATGCTGGGACCGAGAAAGGAAGGAAATGGTTGCGATTAAAATTGTACGTGGGATAAAGAAGTATCGAGAAGCAGCCATGATAGAAATTGAGGTGCTGCAACAGCTTGGTAAACATGACAAAGGAGGCAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGCGAGATTGGCAGACAACTATTGGAATGTATAGCATTCATGCATGATTTGCGGATGATTCATACTGACCTGAAGCCTGAAAACATATTACTAGTTTCGCCAGAGTATGTCAAAGTGCCTGACTACAAGAGTTCGTCTAGATCACCAAGTACCTATTTCAAGAGAGTTCCCAAATCTAGCGCCATAAAGGTAATTGATTTTGGCAGCACCACTTACGAACGTGATGATCAGACTTACATTGTATCAACTCGTCATTATAGAGCGCCTGAAGTTATCCTTGGACTTGGCTGGAGCTATCCATGCGATATATGGAGTGTAGGATGTATATTGGTTGAGTTATGCACGGGCGAAGCATTATTTCAGACTCATGAAAATTTAGAACATCTTGCTATGATGGAAAGGGTACTTGGTCCCTTACCGCAGCACATGTTGAAGAGAGTCGACCGAAATGCTGAGAAGTATGTTAGGAGGGGTAGATTAGACTGGCCTGAGGGTGCAACCTCGCGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGTTACAGAACCTCATAATGCAGCATGTGGATCATTCAGCAGGCGATCTCATCCATCTGTTGCAGGGATTACTTAGATTTGATCCCTCTGAAAGACTTACAGCCAAGGAAGCCCTTAGATACCCCTTCTTTATGAGAGATCACTTCAGGAGATAA 1422 0.4304 MEMERVFEFPHSHMDRRPRKRARLGWDIPEVPKVTFPFVSQGLFDDIFCFIDRISPLELPCLYVEFLLFGLYSELVAQVGLFCGQDVGAISSYAPSRGPSEHTTCSLFVKAVAQNGSPPWRDDDKDGHYMFALGDNLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLGKHDKGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLECIAFMHDLRMIHTDLKPENILLVSPEYVKVPDYKSSSRSPSTYFKRVPKSSAIKVIDFGSTTYERDDQTYIVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQHMLKRVDRNAEKYVRRGRLDWPEGATSRESIKAVMKLPRLQNLIMQHVDHSAGDLIHLLQGLLRFDPSERLTAKEALRYPFFMRDHFRR 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00586 473 Gene3D Phosphorylase Kinase; domain 1 128 221 - -
Vimu7g00586 473 FunFam Serine/threonine-protein kinase AFC2 217 466 - -
Vimu7g00586 473 SUPERFAMILY Protein kinase-like (PK-like) 128 470 IPR011009 -
Vimu7g00586 473 ProSiteProfiles Protein kinase domain profile. 141 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g00586 473 FunFam Serine/threonine-protein kinase AFC2 128 221 - -
Vimu7g00586 473 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 469 - -
Vimu7g00586 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Vimu7g00586 473 Gene3D Transferase(Phosphotransferase) domain 1 195 466 - -
Vimu7g00586 473 CDD PKc_CLK 128 466 - -
Vimu7g00586 473 SMART serkin_6 141 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g00586 473 Pfam Protein kinase domain 141 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00586 Vimu-Chr7 5941178 5944673 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00586 146 466 Core Cell Cycle Gene Families AT1G76540 25.602 1.01e-26 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Vimu7g00586 Pkinase 2.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00586 K08287 - gmx:100804452 830.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00586 7 5941178 5944673 Vimu7g00586 7 5941178 5944673 ECH