Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00584 ATGCAAGTTCCGATCCTTGAAACCAAATGTAAATGGAATTTAGAAAATGAGGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCCAGCTATGCTCCTTCAAGTGGTCCCTCAGAACATAGCACTAGTTCTCTATTTGTTAAGGAAGTTGCACAAAATGGTTCTCCCTCTTGGCGAGATGATGACAAAGATGGACATTACATGTTTGCGCTTGGAGAAAATTTAACTTCTCGCTATAGGATCCACAGCAAAATGGGTGAAGGAACTTTTGGAAAAGTTTTAGAATGTTGGGACAGAGAAAGGAAAGAAATGGTTGCAATAAAAATTATCCGAAGCATAAAGAAGTATCGAGAAGCAGCCATGATAGAAATTCAGGTGTTGGAACAGCTTGGTAAACATGACAAAGGAGGCAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCCTTTCCCATTGATCTTGTCCTCATGCATGACTTGCGGATGATTCATACCGACCTCAAGCCGGAAAACATACTGCTAGTGTCACCAGAGTATGTCAAAGTTCCTGACTACAAGAGCACATCCAGATCTCCTGGTTCCTATTTTAAAAGGGTTCCCAAATCAAGTGCTATAAAGGTTATTGATTTCGGCAGCACCACTTATGAGAGAGAAGATCAGAATTACATTGTATCAACTCGTCATTATAGAGCTCCTGAAGACTTGGCTGGAGCTATCCGTGTGATATTTGGAGTGTGGGATGTATATTGGTTGAGTTATGTACGGTATGTTTGTCTCTTTCAAACCTTTACACTTGTCGCACTTATCCATCTTATGGGAGAAGCTTTATTTCAGACTCATGAAAATTTAGAGCATCTTGCAATGATGGAAAGGGTTCTTGGTCCATTACCACTGCACATGTTGAAGAGAGTCGACCGACATGCTGAGAAGTATGTTAGGAGAGGTAGATTACATTGGCCTGATGGTGCGACTTCAAGGGATAGTATCAAAGCTGTAATGAAGCTTCCAAGGCTACAGAACCTTATAATGCACCATGTGGACCATTCAGCTGGCGATGTCATACATCTCTTGCAGGGGTTACTTAGATTCGACCCTTCTGAAAGGCTTACAGCCAAAGAAGCTCTTAGACATTCCTTCTTTATGAGAGACCACTTTAGGAGATAA 1251 0.4093 MQVPILETKCKWNLENEAQVGLFCGQDVGTISSYAPSSGPSEHSTSSLFVKEVAQNGSPSWRDDDKDGHYMFALGENLTSRYRIHSKMGEGTFGKVLECWDRERKEMVAIKIIRSIKKYREAAMIEIQVLEQLGKHDKGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVLMHDLRMIHTDLKPENILLVSPEYVKVPDYKSTSRSPGSYFKRVPKSSAIKVIDFGSTTYEREDQNYIVSTRHYRAPEDLAGAIRVIFGVWDVYWLSYVRYVCLFQTFTLVALIHLMGEALFQTHENLEHLAMMERVLGPLPLHMLKRVDRHAEKYVRRGRLHWPDGATSRDSIKAVMKLPRLQNLIMHHVDHSAGDVIHLLQGLLRFDPSERLTAKEALRHSFFMRDHFRR 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00584 416 Pfam Protein kinase domain 82 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g00584 416 FunFam Serine/threonine-protein kinase AFC2 69 162 - -
Vimu7g00584 416 ProSiteProfiles Protein kinase domain profile. 82 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g00584 416 Gene3D Transferase(Phosphotransferase) domain 1 161 414 - -
Vimu7g00584 416 SUPERFAMILY Protein kinase-like (PK-like) 69 413 IPR011009 -
Vimu7g00584 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Vimu7g00584 416 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 42 412 - -
Vimu7g00584 416 SMART serkin_6 82 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g00584 416 CDD PKc_CLK 69 409 - -
Vimu7g00584 416 Gene3D Phosphorylase Kinase; domain 1 55 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00584 Vimu-Chr7 5926042 5929064 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00584 68 205 EF-hand Containing Proteins AT5G22840 35.669 4.31e-21 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Vimu7g00584 Pkinase 2.8e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00584 K08287 - gmx:100804452 665.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00584 7 5926042 5929064 Vimu7g00584 7 5926042 5929064 ECH