Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00577 ATGTCTATGCCTTTCTCTCTCACAACCACGTCTTCCTTCAACTCTCTCACAATGGCGGAATCATGCATTCTCTCTCTCCCTTCTCTCTTCCGCCTCAATAACAAAACCCTTTCTCTCTCACTTCCCTCCAAGCGCCTCAACCTCAAGCTTCCATGCTCCAATTCTTCCTTCTTTCCCCTCACCACCAACACCACCCGCCTCCCCTCTCTCCTCACATTCGTCGCCCAGACATCGGATTGGGCCCAAGGAGAGGAAGACAACGCCATATGGGAGAACGAAGGCGACTCCGCGTGGGGAACTGAAGAAGGCGGCGATGACGGCGATGACGGCGCGGAGGAAGTCACCGGAGGGGGTTTCGCTCAACCACCCGAGGAGGTTAAGATCTTTGTTGGGAACTTGCCTTATGACGTTGATAGCGAGCAATTGGCTTTCCTTTTTAAGGAGGCTGGCACCGTTGAGGTTGCTGAGGTAATTTATAATAAGGTCACTGACCGGAGTCGTGGCTTTGGATTTGTCACCATGAGTACACTTGAAGAGGTTGAGAAGGCTGTCAAGAAGTTCAGTGGTTACGAACTAAATGGAAGAGTGTTGACCGTAAATAAGGCTGCTCCAAAAGGAGCACAGCCTGACCGCTCATCACAGCCACCACGAACCTTGAGTTCTGCTACAAGAATCTACGTTGGGAACTTGCCATGGACTGTTGACAATGCTCGGCTAGAGCAAATTTTTAGTGAACATGGTAAGGTTGTGGAGGCTCGGGTGGTCTATGACAGGGAGAGTGGTCGATCACGTGGTTTTGGCTTTGTCACAATGGCCAGTGAGGCTGATGTGAACGATGCGATTGCTGCTCTTGATGGTCAGGAATTGGATGGGAGACCAATCAGAGTGAATGTTGCAGAGGAAAGGCCTAGACGCAACTCCTATTGA 927 0.5092 MSMPFSLTTTSSFNSLTMAESCILSLPSLFRLNNKTLSLSLPSKRLNLKLPCSNSSFFPLTTNTTRLPSLLTFVAQTSDWAQGEEDNAIWENEGDSAWGTEEGGDDGDDGAEEVTGGGFAQPPEEVKIFVGNLPYDVDSEQLAFLFKEAGTVEVAEVIYNKVTDRSRGFGFVTMSTLEEVEKAVKKFSGYELNGRVLTVNKAAPKGAQPDRSSQPPRTLSSATRIYVGNLPWTVDNARLEQIFSEHGKVVEARVVYDRESGRSRGFGFVTMASEADVNDAIAALDGQELDGRPIRVNVAEERPRRNSY 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00577 308 MobiDBLite consensus disorder prediction 92 121 - -
Vimu7g00577 308 SUPERFAMILY RNA-binding domain, RBD 214 306 IPR035979 GO:0003676
Vimu7g00577 308 PANTHER OS02G0815200 PROTEIN 40 304 - -
Vimu7g00577 308 Gene3D - 76 210 IPR012677 -
Vimu7g00577 308 Gene3D - 211 307 IPR012677 -
Vimu7g00577 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 301 IPR000504 GO:0003723
Vimu7g00577 308 SMART rrm1_1 127 200 IPR000504 GO:0003723
Vimu7g00577 308 SMART rrm1_1 224 297 IPR000504 GO:0003723
Vimu7g00577 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 126 204 IPR000504 GO:0003723
Vimu7g00577 308 FunFam 31 kDa ribonucleoprotein, chloroplastic 213 307 - -
Vimu7g00577 308 SUPERFAMILY RNA-binding domain, RBD 122 216 IPR035979 GO:0003676
Vimu7g00577 308 CDD RRM2_NsCP33_like 224 299 - -
Vimu7g00577 308 MobiDBLite consensus disorder prediction 98 112 - -
Vimu7g00577 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 128 197 IPR000504 GO:0003723
Vimu7g00577 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 225 295 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00577 Vimu-Chr7 5867358 5869717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00577 128 305 Eukaryotic Initiation Factors Gene Family AT3G16380 34.239 1.10e-22 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00577 - - gmx:100811487 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00577 7 5867358 5869717 Vimu10g01344 10 14128818 14130807 ECH
Vimu7g00577 7 5867358 5869717 Vimu7g00577 7 5867358 5869717 ECH
Vimu7g00577 7 5867358 5869717 Vimu10g01344 10 14128818 14130807 PCT