Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00570 ATGGCAACCACTTCCACCTCTCTCCTCTTCCTCCTCTTCTCTCTCCTCACCCCCTCCCTCATTTCTTCTTCACCTTTTCAGAACCCTGAATTCGTTGCTCAAGAAGTTAACAGGAAAATCAATGCCTCTGTGACCAGGAGGAATTTGGGTTACCTGTCATGTGGGACAGGTAACCCAATAGACGACTGTTGGAGGTGTGACCCGAACTGGGAGAAGAACAGGCAGAGGCTGGCGGATTGTGCAATTGGGTTTGGGAAAAACGCGATTGGAGGAAAGAACGGGAAAATCTACGTGGTGACGGATTCAAGCGACGATGACGCGGTGACGCCTAAGCCGGGGACGCTCCGTTACGCTGTGATTCAGGAGGAGCCTCTTTGGATAATTTTCGCGAGGGACATGGTGATAAAGCTGAAGGAGGAGCTCATAATGAACTCGTTCAAGACGATCGACGGAAGAGGAGCCAGCGTGCACATTGCGGGTGGGCCATGCATTACGATACAGTATGTGACGAATGTTATAATCCACGGCATAAACATTCATGACTGTAAGCAAGGGGGGAATGCTATGGTGCGGGATTCCCCACGGCACTACGGGTGGAGGACCGTATCCGATGGTGATGGCGTGTCCATATTTGGAGGAAGCCACATATGGGTTGACCACTGCTCTTTGTCTAATTGCAATGATGGGTTGATCGATGCCATTCATGGGTCTACCGCCATTACCATCTCAAACAATTACATGACTCACCATGATAAAGTGATGCTTTTGGGGCACAGCGACGCCTACACTCAAGACAAGAACATGCAGGTCACGATTGCTTTCAACCACTTTGGGGAAGGGCTGGTTCAGAGGATGCCAAGGTGTAGGCATGGATATTTTCATGTGGTGAACAATGACTACACCCACTGGGAAATGTATGCCATTGGAGGAAGTGCCGACCCAACTATCAACAGCCAAGGAAATAGGTTCGTTGCACCCGATGACAGATTCAGCAAAGAGGTGACAAAGCATGAGGATGCACCAGAGAGTGAATGGAAAGGGTGGAATTGGAGGTCTGAAGGAGACCTAATGGTAAACGGTGCGTTTTTCACAGCATCGGGAGCAGGAGCCTCCTCTAGCTATGCAAGAGCGTCTAGCCTGAGCGCGAGGCCATCTTCGCTGGTGGGCTCCATTACGACCAATGCGGGTGCACTGATCTGCAGGAAGGGTTCCCGCTGCTGA 1221 0.5094 MATTSTSLLFLLFSLLTPSLISSSPFQNPEFVAQEVNRKINASVTRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGKNGKIYVVTDSSDDDAVTPKPGTLRYAVIQEEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIIHGINIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGSHIWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDAYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRFVAPDDRFSKEVTKHEDAPESEWKGWNWRSEGDLMVNGAFFTASGAGASSSYARASSLSARPSSLVGSITTNAGALICRKGSRC 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00570 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Vimu7g00570 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Vimu7g00570 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Vimu7g00570 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Vimu7g00570 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Vimu7g00570 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Vimu7g00570 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Vimu7g00570 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Vimu7g00570 406 PANTHER PECTATE LYASE 18-RELATED 27 404 IPR045032 GO:0030570
Vimu7g00570 406 FunFam Pectate lyase 57 399 - -
Vimu7g00570 406 SUPERFAMILY Pectin lyase-like 36 401 IPR011050 -
Vimu7g00570 406 SMART amb_all 132 329 IPR002022 -
Vimu7g00570 406 Gene3D - 57 399 IPR012334 -
Vimu7g00570 406 Pfam Pectate lyase 139 323 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00570 Vimu-Chr7 5781651 5783686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00570 9 406 Polysaccharide Lyase AT5G63180 79.500 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00570 K01728 - gmx:100101868 739.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00570 7 5781651 5783686 Vimu10g01365 10 14359307 14362494 ECH
Vimu6g01566 6 14595326 14598060 Vimu7g00570 7 5781651 5783686 ECH
Vimu10g01365 10 14359307 14362494 Vimu7g00570 7 5781651 5783686 ECH
Vimu7g00570 7 5781651 5783686 Vimu7g00570 7 5781651 5783686 ECH
Vimu7g00570 7 5781651 5783686 Vimu10g01365 10 14359307 14362494 PCT