Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00569 ATGGATGGTAGGAGACATTCTGTTGATATTCCTATTTCGAAAACTCTTGTGGCACTGAGGAGAGTAAGGTCATTGAGGGATCCGTCAACTAACGGTGTCAGCAAACTCTCTCCTTTGATTCATGATGGAGATTGGGACAATGGCTCTAGTAATGGGGTTTCTCTGAGTTTGAGATTTCTGAACGGTTCTCAGGCTGGTGATTGCGACGGTAATGGTTTTTCAAGATCAAACAGTTTAGACTTTAAGGATCTGAGAGAGCAGGAAACTGCTGAGTTAGAATTGAAAATGTTGAACTATAAGATGAACTATTGTGGGATCTCTCGTCAGGAAGGGCAACGAGATGATGAACCTGTGTACTCTAATCCTAAGCAGCAAGGTATTTCTGGAGATAAATCGCCAAATGGAAGCAGTTGTAGTAACCATGAAGGTGAAAGATTGGATTTGGTTGCCGTTACGCCTCCATGTAATCATTTGAAGGATGGGGAGTTATGCTATTTATCAACTGCATTGAGAGTAGATCACTCAAAGTCAGCTAGAAAATCACTACGCAAGAATCAAATGAAACCATCTGGAGTGGTAGGTGATATAGCAAGCCATGTAGGAAGTCAACAGTGCCTTTCTGTTTATGATTCTATATCAGCTCGTTGTGGCTTGGAACATGTCATCCAAGATGTTGACGCTTTATATAATCGCCATGGATGTGGATTAAGGAGCTGTTGGTCAAAGTCGCCAAGGTTTAGAGAATCAAATCATTATTCCGAAATGGAAGGCCTTCCCTTGATATTGCAGCACGCTAATGAAACGGATCTCAATGGACGTAGAAACATTGGACACATTGGTGGTGAAATTAGTCCAAATATGGAAACTCCTAGAAGTTTATCTGTGAAATTCAGGCCAAAATCTTTCGATGATTTGGTTGGACAAAATGTGATAGGTAAGTCTCTTTTGGGTGCTATCTGTAGGGGAAGGATAGCATCATTTTATCTCTTCCATGGTCCACGCGGCACGGGCAAGACCTCAGCCTCTAGGATATTTGCTGCTGCACTGAATTGCCTATCCTCTATGGAACAAAAGCCTTGTGGTCTGTGTAGAGAATGCGTTTTGTTCTTCTCTGGAAGAAATAAGAATGTTAGTGAAGTAGATTCTTTGAGAATCAATCGTGCAGAGAAAGTTAAATCCCTTGTTAAGCACGCATGCATTCCTCCAGTTTCCTCAAGCTTTAAAGTGTTCATTGTTGACGAGTGCCAGTTATTGCATGGAGAAACATGGGCGTGCCTTTTGAATAGTCTAGAGAATGTTTCTCCTCATGTGGTTTTTGTGATGATCACTCCTGATTTGGATAACGTTCCTCGGAGTGCAGCATCACGGGCTCAGAGGTATCACTTTGCAAAGATTAAGGATGTTGACATTGTAAGAAGATTAGAAACAATATGTGTCGAAGAAGGTCTTGAATCTGAACAAGTTGCTTTGGATTTCATTGCTGCTAGATCCTGTGGTTCTCTTAGGGATGCAGAAATTATGCTTGATCAACTGAGTTTGCTTGGTAAAAAGATCACAGTATCCTTAGTCCACGAGCTAACTGGGATCATTTCTGATGATGAATTGCTTGATTTGTTGGACCTAGCTTTATCCTCTGACACTTCAAATACAGTTATACGAGCCCGGGAACTTGTCAGAACAAGGATAGATCCTTTACAACTTATATCACAGTTGGCAAATCTTATTATGGACATTCTGTCAGGGAAATGTGAACTTCCGGAAGCAGACCTGCAGAAACTAAGTCATGCATTAAGAATACTGTCTGAATCAGAGAAGCAGTTGAGAATTTCCAAGAATCAAACAACATGGTTCACTGCAGCTCTTCTGCAGCTGAGCTCCGTTGAATATTCTACGAAGTTGTGTACACGACCTGCATCCATTAGAGATGGTGATATCTGCAGTACATCTCCTAAAGGTGACAGCTTGGAGCATCTTGCCACAACAGATCAATGTGATGATAAGTCATACAGGTTAGCAGTACAGGAGGATCACAAAGGAACATTGGATTCTATATGGTATAAAGCTACTGAGATGTGTCAATCTAGCAGGCTCAGAACTTTTCTCAGGAAACAGGGGAAGTTGTCTTCAGTTTGTATTAGTCAAGGCCGTGCAGTTGCGGAGTTGGAGTTCCAGCATCGTGACTATGTAAGTAGGGCCGAGAAGTCATGGAAGTTGATTGCAAGTTCTCTGCAGTTAATATTGGGTTGTAACCTTGAGCTCAGAATCAATTATGTTCCTTCATGTGCCTCAGATTCTATTTATGCTAAATTGAAGAGGTCATCCTTCAATTTCTTCGGTTGTTCCCGCAGAATTCGTTGGAAATCTTTATCATCTAATGAACAAGGAAGTGAATCAGACTATGCTGAATACACCTCTCAAAAGCCCACGATGAATGTTCAAACGGCAACTTGTTCCTCTGATTATGAACCCCGGGTGCCACCAGTTGAGTCCGGCCATGGAATTGGAATGCAGGTTATGACAACTTTGAGAAGTAGCGAAGGAAATTTGCTAAGCTCAGGGAAAATGTTTTTGAATAGGCCAGATCAAGAGACTCCAAGAATTTCTTGTTCGAGAGTTGATTCTTGCACGGAAGAGGGATGCAATCATGAACACTTAGCTTCATCAACCCCTGATTTGGATAATCAGTCCGACTGTTTTCCTGGAACCCGCTGGCTTCATAAAAAGTTTGGTTCTTCTTATGCACCACAGCAAAAGGATTTTGTTTTATCTATGCCCAAGTTCAACTGTTCTGAGATTTGCAGATATGATCTGGAACCCAGTGTCTTTTCTCACCTTTCTAACAACTGCACTCAAGCAGCTGCGGAGAAGTAA 2871 0.4173 MDGRRHSVDIPISKTLVALRRVRSLRDPSTNGVSKLSPLIHDGDWDNGSSNGVSLSLRFLNGSQAGDCDGNGFSRSNSLDFKDLREQETAELELKMLNYKMNYCGISRQEGQRDDEPVYSNPKQQGISGDKSPNGSSCSNHEGERLDLVAVTPPCNHLKDGELCYLSTALRVDHSKSARKSLRKNQMKPSGVVGDIASHVGSQQCLSVYDSISARCGLEHVIQDVDALYNRHGCGLRSCWSKSPRFRESNHYSEMEGLPLILQHANETDLNGRRNIGHIGGEISPNMETPRSLSVKFRPKSFDDLVGQNVIGKSLLGAICRGRIASFYLFHGPRGTGKTSASRIFAAALNCLSSMEQKPCGLCRECVLFFSGRNKNVSEVDSLRINRAEKVKSLVKHACIPPVSSSFKVFIVDECQLLHGETWACLLNSLENVSPHVVFVMITPDLDNVPRSAASRAQRYHFAKIKDVDIVRRLETICVEEGLESEQVALDFIAARSCGSLRDAEIMLDQLSLLGKKITVSLVHELTGIISDDELLDLLDLALSSDTSNTVIRARELVRTRIDPLQLISQLANLIMDILSGKCELPEADLQKLSHALRILSESEKQLRISKNQTTWFTAALLQLSSVEYSTKLCTRPASIRDGDICSTSPKGDSLEHLATTDQCDDKSYRLAVQEDHKGTLDSIWYKATEMCQSSRLRTFLRKQGKLSSVCISQGRAVAELEFQHRDYVSRAEKSWKLIASSLQLILGCNLELRINYVPSCASDSIYAKLKRSSFNFFGCSRRIRWKSLSSNEQGSESDYAEYTSQKPTMNVQTATCSSDYEPRVPPVESGHGIGMQVMTTLRSSEGNLLSSGKMFLNRPDQETPRISCSRVDSCTEEGCNHEHLASSTPDLDNQSDCFPGTRWLHKKFGSSYAPQQKDFVLSMPKFNCSEICRYDLEPSVFSHLSNNCTQAAAEK 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00569 956 FunFam DNA polymerase III subunit gamma/tau 466 528 - -
Vimu7g00569 956 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 315 514 IPR027417 -
Vimu7g00569 956 NCBIfam DNA polymerase III subunit gamma/tau 292 624 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Vimu7g00569 956 CDD HLD_clamp_pol_III_gamma_tau 465 528 IPR045085 -
Vimu7g00569 956 SMART AAA_5 324 472 IPR003593 GO:0016887
Vimu7g00569 956 MobiDBLite consensus disorder prediction 110 141 - -
Vimu7g00569 956 Gene3D - 284 463 IPR027417 -
Vimu7g00569 956 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 295 693 - -
Vimu7g00569 956 MobiDBLite consensus disorder prediction 118 141 - -
Vimu7g00569 956 SUPERFAMILY post-AAA+ oligomerization domain-like 529 625 IPR008921 GO:0003677|GO:0006260
Vimu7g00569 956 Pfam DNA polymerase III, delta subunit 309 465 - -
Vimu7g00569 956 Gene3D - 467 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00569 Vimu-Chr7 5757803 5762751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00569 283 607 Core DNA Replication Machinery Family AT1G21690 23.939 2.52e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00569 - - pcin:129308301 1086.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00569 7 5757803 5762751 Vimu7g00569 7 5757803 5762751 ECH
Vimu7g00569 7 5757803 5762751 Vimu10g01373 10 14484852 14488594 PCT