Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00564 ATGACTCCTTTTGACTACTCTGTTACGTCAGAAGATCATGACAACACTTCAGGGGTGGCATTTAGAAATACTAGGGCTGTGCCCCATCCCACCTTGAATTGTTCCCAAGATACTCACACTGATGAAGACTCGTCTAGAATGCATATCTTTTGTTTAGAGCATGCTGTAGAAGCAGAGCAGCAACTTCGTCCAATTGGAGGAGCACACATATTGCTCCTATGTCATCCAGATTATCCAAAGATAGAGGCTGAAGCAAAGTTTGTGGCAGAAGAACAGGGGATTGGTTATACGTGGAAGAATACTGTATACAAGCAAGCCAACAGGGAAGATGAGGAGAGGATCCAATCAGCTCTGGATAGTGAGGAAGCTATTCCTGGAAATGGGGACTGGGCTGTAAAGCTGGGAATCAATCTCTTTTATAGTGCCAATCTTAGCCGTTCAGCACTTTACAGTAAGCAGATTCCTTACAATTCTGTTATATATAAAGCATTTGGTCAAAGCTCTCCAGCAAGCTCGCCTACAGAGCCCAAGGTCTATCAGAGAAGGACCAACAAGCAGAAAAAGGTAGTTGCTGGGAAATGGTGTGGAAAAGTTTGGATGTCCAATCAAGTCCATCCCCTTTTAGCAAAAAGAGATTCTGAAGATGTTGAGGATGAAACAAGCTTACATGGGTGGCCATTGCCTGATGAGAAAATTCAGAGATCAGAAAGCAAGCACAAAAGCAATACCTCAACTCAAAAATCTGGTAAGAAATGGAAAAAATCTGTTGAGAAAGGAGGAATCTGGGAAGAAAGCTTTGTTGAGAGAGATTGGCTTTCAGAAAGCTCCATTGAAGATAAATTCAATAAATATCAAAGGAGGATTATTGGGGGTAAGCACTCCAGGCATATTGAGAGAGATGATACTGCTTCGGAAGGGCATTATTCTCCTCTGCCACTTCATAGAAAGCCTATAACCAAGCATTCAGAATCTAGTGAAAATGATGGAATGTCTGATGATTTGCTGGATGATGATTCTTGTATACAGCATCGAAGGAGGGCTAACACCAACGAAGCTAAATTAATTGACAGTGATGTGTTTTCAGATGATACAATGGACTATGGTTCTGATTGGTTGCGGAGGGGGGAGCTTAGCAATGAGCAAGGTGCTATTTCAGATGATTCATTGAGTGCTGGTTCTCTTCAACTGCACGGAAAGATTCCCAAAGGCAAGTATGATAAATACATTACCGAAGAAGACGTGATTTCTGATGACCAAAGGGAGGTTTGTTTATGGAAGCAGAGAGGGAAGATATCTAAAGGCGGACAAAGATCACTTTCTGCTAAAAGTGATGATGGTCTGAAGCACCATAGGCAGAAGCAGCAACAAAAGAATCTGAGAAGCAGGCAAGACAAGCACTTTGCAGTAGAGAATATTACATCTGATGACCAAATGGAGGGTCGTTTTTTCAAGTGTCAAAGAAGGATTCCTAAAAACAAGCAAGTGAAGTTCATCGAGGAGGAAGATGTAATGTCTGATGACCAGTTGAAGGGTGACTTTCAAAAGCCCCAAAGAAGTACTCGAAGGAGCAGGCAAAATAAATACAATGATAAAGATGTTATGAATGACTTGGCAGAAAATAATTTTCATATACTGTATAGAACTCGTAAAAGGAAGCAAGTTAAAGGTATGGACGAGGACAATATAGATTCAGATGATCAAATGGATGATATTTTGCATCAGCGGCACAAAAGAACTCTTCAGAGTAAGCAATCTAAAGCACAGATTCTTCAACAAACGAAACAAACTAATCCACACCATGCGAGAAACAAGACATCCCATCCTGCCAAACAGAAACAAGGTGCTCATACGAAAATGAAATCAAAGGCTGCTCGGCAGACAAAGAATCAATCTGGTAACTCCAAAGACTTAACATTACATGTGGCAGAGGAGGAAGATGGTGGACCTCGAACACGACTTAGGAAGAGAGTCCTAGAAAGAGAGTCAGAAGGAAAATTGAAAGAAAAGAGAACCAAAAGGGAAAAGGAGTTGAATACAACAGCTGCAAAGGTTTTAGTTGGCCATGCCAAAACAAAGGATGAGGAATCAGAATATCAATGTGACATAGAGGGATGCACAATGAGTTTTGGGTCTAAACAGGAGCTGTTGCAACATAAGAGAGACATTTGTCCTGTGAAAGGATGCGGAAAGAAGTTTTTCTCACACAAATATCTAGTGCAGCATCGTCGAGTTCATGAGGATGACCGCCCATTGAAGTGCCCTTGGAAAGGGTGCAAGATGAGTTTCAAGTGGGCATGGGCACGCACTGAGCACATTCGAGTCCACACTGGTGCTCGTCCTTATGTGTGTGCTGAGCCAGGGTGTGGGCAAACATTTAGATTTGTTTCTGATTTCAGTCGTCACAAGCGAAGGACTGGTCATGCAACCAAGAAGAATTGTTGA 2442 0.4197 MTPFDYSVTSEDHDNTSGVAFRNTRAVPHPTLNCSQDTHTDEDSSRMHIFCLEHAVEAEQQLRPIGGAHILLLCHPDYPKIEAEAKFVAEEQGIGYTWKNTVYKQANREDEERIQSALDSEEAIPGNGDWAVKLGINLFYSANLSRSALYSKQIPYNSVIYKAFGQSSPASSPTEPKVYQRRTNKQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDVEDETSLHGWPLPDEKIQRSESKHKSNTSTQKSGKKWKKSVEKGGIWEESFVERDWLSESSIEDKFNKYQRRIIGGKHSRHIERDDTASEGHYSPLPLHRKPITKHSESSENDGMSDDLLDDDSCIQHRRRANTNEAKLIDSDVFSDDTMDYGSDWLRRGELSNEQGAISDDSLSAGSLQLHGKIPKGKYDKYITEEDVISDDQREVCLWKQRGKISKGGQRSLSAKSDDGLKHHRQKQQQKNLRSRQDKHFAVENITSDDQMEGRFFKCQRRIPKNKQVKFIEEEDVMSDDQLKGDFQKPQRSTRRSRQNKYNDKDVMNDLAENNFHILYRTRKRKQVKGMDEDNIDSDDQMDDILHQRHKRTLQSKQSKAQILQQTKQTNPHHARNKTSHPAKQKQGAHTKMKSKAARQTKNQSGNSKDLTLHVAEEEDGGPRTRLRKRVLERESEGKLKEKRTKREKELNTTAAKVLVGHAKTKDEESEYQCDIEGCTMSFGSKQELLQHKRDICPVKGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMSFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRRTGHATKKNC 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00564 813 ProSitePatterns Zinc finger C2H2 type domain signature. 723 745 IPR013087 -
Vimu7g00564 813 MobiDBLite consensus disorder prediction 638 675 - -
Vimu7g00564 813 SMART c2h2final6 721 745 IPR013087 -
Vimu7g00564 813 SMART c2h2final6 781 807 IPR013087 -
Vimu7g00564 813 SMART c2h2final6 698 720 IPR013087 -
Vimu7g00564 813 SMART c2h2final6 751 775 IPR013087 -
Vimu7g00564 813 ProSiteProfiles Zinc finger C2H2 type domain profile. 721 750 IPR013087 -
Vimu7g00564 813 MobiDBLite consensus disorder prediction 583 599 - -
Vimu7g00564 813 PANTHER ZINC FINGER PROTEIN ZIC AND GLI 562 806 - -
Vimu7g00564 813 MobiDBLite consensus disorder prediction 507 533 - -
Vimu7g00564 813 Gene3D Classic Zinc Finger 722 805 - -
Vimu7g00564 813 ProSiteProfiles Zinc finger C2H2 type domain profile. 751 780 IPR013087 -
Vimu7g00564 813 MobiDBLite consensus disorder prediction 210 254 - -
Vimu7g00564 813 Gene3D Classic Zinc Finger 666 721 - -
Vimu7g00564 813 MobiDBLite consensus disorder prediction 434 468 - -
Vimu7g00564 813 MobiDBLite consensus disorder prediction 576 675 - -
Vimu7g00564 813 ProSiteProfiles Zinc finger C2H2 type domain profile. 781 812 IPR013087 -
Vimu7g00564 813 MobiDBLite consensus disorder prediction 600 623 - -
Vimu7g00564 813 SUPERFAMILY beta-beta-alpha zinc fingers 722 757 IPR036236 -
Vimu7g00564 813 MobiDBLite consensus disorder prediction 442 468 - -
Vimu7g00564 813 SUPERFAMILY beta-beta-alpha zinc fingers 761 805 IPR036236 -
Vimu7g00564 813 MobiDBLite consensus disorder prediction 295 336 - -
Vimu7g00564 813 ProSitePatterns Zinc finger C2H2 type domain signature. 753 775 IPR013087 -
Vimu7g00564 813 MobiDBLite consensus disorder prediction 210 243 - -
Vimu7g00564 813 FunFam Probable lysine-specific demethylase ELF6 778 807 - -
Vimu7g00564 813 ProSitePatterns Zinc finger C2H2 type domain signature. 783 807 IPR013087 -
Vimu7g00564 813 FunFam Probable lysine-specific demethylase ELF6 748 777 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00564 Vimu-Chr7 5728816 5731811 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00564 443 811 C2H2 Transcription Factor Family AT3G48430 38.071 7.57e-67 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu7g00564 None None None