Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00561 ATGCAGTATTACCAAATACTTCATTCACCACCCTCTTTCATGGATTCCCTCAAGGCACTTGAGGCTGATATCCAGCATGCCAATGTGCTGGCAGCTTCCATTCCAAAGGGGAATGGCGAGGATTACCTTCAAATGAAGTTAGTATACAGTAAACTGGCACCGATTCTGTTTTTCTTTCAATGGATGGATTATTCATGCTCCTGTCTACCTTCCAGTCATTTTAATCTTTTCCGTGTGCTTGTGTTTAAGGTGCACACTAATGGAAAATCAGATATGTATTCAAGTGGAAGGAAAGCAACCGTAAGGGAGTTCTACAGTGTCATATTACCTTCACTCCAACGACTTCATGGTGATTTGGTAGAAGCTAACATTGGTGAAGAAAATGATGACAACACTGAGATGATAAGCAGTAAGGACGATAAGAGGATGGCTTCAGATTATGAGTTGGAGAGAGACCATGAGTGTGGCATTTGCTTAGAATCTACCACCAAAATGGTTTTGCCTAATTGCTGCCATGCTATGTGTATAAATTGTTACAATGACTGGAACACAAGGTCAGAATCTTGTCCATTTTGCCGGGGAAGCTTAAAGAGAGTTAATTCAGGGGATTTGTGGGTTCTAACATGTAGTAGAGATGTGATTGATATGCAAACCATAAACAGAGAAGATGTGTTGCGTCTTCATCTCTTTGTGAATAATCTTCCCCAATATACACCTGATGCTGTTTTCCTTATGTACTACGAGTACTTATTTTAG 756 0.4021 MQYYQILHSPPSFMDSLKALEADIQHANVLAASIPKGNGEDYLQMKLVYSKLAPILFFFQWMDYSCSCLPSSHFNLFRVLVFKVHTNGKSDMYSSGRKATVREFYSVILPSLQRLHGDLVEANIGEENDDNTEMISSKDDKRMASDYELERDHECGICLESTTKMVLPNCCHAMCINCYNDWNTRSESCPFCRGSLKRVNSGDLWVLTCSRDVIDMQTINREDVLRLHLFVNNLPQYTPDAVFLMYYEYLF 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00561 251 FunFam RING/U-box superfamily protein 136 202 - -
Vimu7g00561 251 ProSitePatterns Zinc finger RING-type signature. 170 179 IPR017907 -
Vimu7g00561 251 SMART ring_2 155 192 IPR001841 -
Vimu7g00561 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 202 IPR013083 -
Vimu7g00561 251 PANTHER RING FINGER PROTEIN 41, 151 12 249 - -
Vimu7g00561 251 ProSiteProfiles Zinc finger RING-type profile. 155 193 IPR001841 -
Vimu7g00561 251 Pfam Zinc finger, C3HC4 type (RING finger) 152 198 - -
Vimu7g00561 251 SUPERFAMILY RING/U-box 145 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00561 Vimu-Chr7 5696511 5697639 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00561 142 231 C3H Transcription Factor Family AT2G20030 31.959 7.03e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00561 - - qsa:O6P43_022602 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00561 7 5696511 5697639 Vimu7g00561 7 5696511 5697639 ECH