Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00552 ATGGCCCCTCCTCAGTATGGTGCCTTGAACGGAGAAATCGATGGTGAAAATCTATCGTACGTGTTTGATATATGGGCAACCGATCAATATAGCTGTTTTCCTCTTCAGCCTATTTCGGAGAGTAACAGTTGTACCTTAGTTCTCCCCTATTGTGACGGAAGCATAAGGGATAACAAAAGGGTGAAGAGAACGGTGGGAATCCCCGTTGAGTGGTTAGGAAATTTGATGAACAATTCCCACAGTTTCCTCAACACCAACGCCAACAACTGCAATAGGAGTAGGGATAGCATACCAAAGCTTCATTTCAGAGATCACATACGGACTTACACACAAAGATATCTGGCAGCGGAAGCAGAAGAAGAGGCACCAGAAGACATAAATAGTTCAGAAAGTGATGGAGCTGAAGAAGACGGTTGTCATGACGGTGTGAGGCTGGTTCAACTTCTAATAGCATGTGCAGAAGCAGTGGCTTGTCGAGACAAATCGCACGCTTCAATATTACTATCAGAACTCAAAGCCAACGCTTTAGTATTCGGATCTTCGTTCCAAAGAGTTGCCTCTTGTTTTGTTCAAGGCCTAATTGAGAGGCTGAATCTGATTCAGCCCACCGGGCCAGTGAGCCCGATGCCACCCATGATGAACATTATGGACACAGCTTCCGAAGAAATGGAGGAAGCATTCAGATTGGTTTACGAGCTGTGTCCACACATTCAGTTTGGACACTTTGTCACTAATTCTATAGTGATGGAAGCCTTTTCGGGTGAGAGTTTTGTCCATGTAGTGGATTTCGGGATGACTCTCGGTTTACGACACGGACACCAATGGAGAGAACTGATGCGGAGCCTCGCCAATGGCGGCAGCGAACGTCTTCGTCGGCTGCGAATCACGGCGGTGGGACTCTGCGACAGACTTCAATCCATCGGCGACGAACTCTCGGTTTATGCAACTAATTTGGGTATCAACTTTGAATTCTCAGTGGTGAAAAAGAATTTGGAAAGTTTGAAACCGGAGGACATAGAAGTGAGGGAAGAAGAGGTTCTTGCGGTGAATAGCATTCTGCAGCTGCACTGCGTGGTGAAGGAAAGCCGAGGGGCTTTGAATTCAGTGCTGCAGATGGTTCACGGGCTTGGGCCGAAAGTGTTGGTGATGGTGGAACAAGATTCGAGTCATAACGGACCCTTTTTTCTTGGGAGATTTATGGAATCATTGCACTATTATTCTGCCATATTCGACTCGTTGGATGTGATGTTGCCGAAATATGACACTAAGAGAGCGAAGATGGAGCAGTTTTACTTCGCTGAGGAGATAAAGAACATAGTGAGCCGTGAGGGGCCGTTGAGGATGGAGAGACACGAGAGAGTGGATCAGTGGCGGAGGAGGATGAGCAGGGCGGGGTTTCAGGCTGCGCCGATTAAGATGGTGTCTCAGGCGAAGCAATGGCTTCTGAATGGGAAGGTCTGCGAGGGGTACACGGTGGTGGAAGAGAAAGGGTGTTTGGTTCTTGGATGGAAATCCAAGCCTATTGTGGCGGTTTCTTGCTGGAAATGCTGA 1551 0.4778 MAPPQYGALNGEIDGENLSYVFDIWATDQYSCFPLQPISESNSCTLVLPYCDGSIRDNKRVKRTVGIPVEWLGNLMNNSHSFLNTNANNCNRSRDSIPKLHFRDHIRTYTQRYLAAEAEEEAPEDINSSESDGAEEDGCHDGVRLVQLLIACAEAVACRDKSHASILLSELKANALVFGSSFQRVASCFVQGLIERLNLIQPTGPVSPMPPMMNIMDTASEEMEEAFRLVYELCPHIQFGHFVTNSIVMEAFSGESFVHVVDFGMTLGLRHGHQWRELMRSLANGGSERLRRLRITAVGLCDRLQSIGDELSVYATNLGINFEFSVVKKNLESLKPEDIEVREEEVLAVNSILQLHCVVKESRGALNSVLQMVHGLGPKVLVMVEQDSSHNGPFFLGRFMESLHYYSAIFDSLDVMLPKYDTKRAKMEQFYFAEEIKNIVSREGPLRMERHERVDQWRRRMSRAGFQAAPIKMVSQAKQWLLNGKVCEGYTVVEEKGCLVLGWKSKPIVAVSCWKC 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00552 516 MobiDBLite consensus disorder prediction 118 137 - -
Vimu7g00552 516 ProSiteProfiles GRAS family profile. 136 515 IPR005202 -
Vimu7g00552 516 Pfam GRAS domain family 145 515 IPR005202 -
Vimu7g00552 516 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 121 510 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00552 Vimu-Chr7 5659223 5660773 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00552 137 516 GRAS Transcription Factor Family AT1G66350 36.761 4.71e-73 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu7g00552 GRAS 6.3e-105 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00552 - - gmx:100815959 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00552 7 5659223 5660773 Vimu7g00552 7 5659223 5660773 ECH