Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00550 ATGGCAATCGTTTCGCGCTTGTTCGTGATCCCAGCCGCGAGGCCCGTTCTCGCCAAAACCATATTCTTCATGTCCTCTTTCTCAGCTCGCACGTTCGAACCGTGCGAGCCGTCACCTTCCCCTGCACGCTCCGAGGAAGAATCGCGAAACGTGAGGGTTTGGGCATGGTGGGACTTCAAGAACTGCCACGTGCCCCCGGATTTCGACGCTTCCAAAGTCGCACCGGCAATAATGGAGGCAGTGAGAGCAAACGGAATCAAAGGACCTCTCAACATCACCGCTTTCGGCGACGTTCAACAACTCCGCAGGGATCATCAGGAAGCACTCGCCTACACCGGCGTTCGCTTCATCCACGTCTCTGACGAGGGAAGAAACAGTGCCGACATTCTCGTTGATCTAATGTATTGGGTTTCTCAGAACCCTCCGCCGGCGCACATATTTCTGATATCCGGCGATAGAAACTTCGCTGGCACGTTACACCGCTTGAGAATGAGTAATTACAATATATTGCTCGCTACGCCGGAGAAAACTCCCAGTGTTCTCCACAGTGCTGCCACGATAGCCTGGATGTGGGATTCGTTGCTCAACGGAGAAAATCTTACTGGAAAGGTCCTCAACCACCCTCCTGACGGGCCTCTTGGCTCTTGGTATGGAAGCTACAAAGAGCCGGTGACGGTGGCGGATCTGGTGACGGAGGAACCGGTCACAGTTGCAGCTCCGCAGGCTACCTCGTTGCCCAATGTGGAGGTCTGCCCTTCTAGGAGCACGGTTCCTAAGTCGGTTTTGAGTAAGATTTGCAATATTTTGAGTTTGCATCCCAAAGGAGTGGGCATTGATCATCTTCGCGCTGAGTTGTTGAAAATTGATGTGCGTTTGGATAAGAATTGGTATGGACATAAAAAGTTTTCCCGCTTTCTGTTGTCGATGCCAGGGGTAGATCTTCGGTCTATTGGTGATGGTCCTCTTCGTGTACATTTGGTTCCTGTGGAATCCATGGAACCATGTAAGAACAGCTCTTTGGAATCAACAGTTTCTGATGCTACGAATGAGGAGAAACGATGTGCAGCGGCACCAAAAGTAAATGGCGAGGGTAAAAGTAAGGTTAGGGATGCTGACAAGAAATTGTCAAATGCTACGAATGAGGAGAAACGATGTGCAGTAGCATCAAAGGTAAATGGCGAGGCTAAAAGTAAGGTTAGGGATGCTGACAGGAAATTGTCAAATGCTACAAATGAAGAGAAACGATGTGCAGCGGCATCAAAGGTAAATGGCGAGGCTAAAAGTAAGGTTAGGGATGCTGACAGGAAATTGGCAAATGCTACGAATGAGGAGAAACGATGTGCAGCGGCATCAAAGGTAAATGGCGAGGTTAAAAGTGAGGTTAGGGATGCTGATAGGAAATTGTCAAATGCTGAAAGGAGTATGGGGGACTATTTAAAATCAGTACAACCGGGGCCTTCAAAAGGGAGACCTGTTGAGGAAAATGGGTTGCGGAAGTCTGCTGTGGCTTGTGACAGGTTTGTGGATGTGGCTAATGCTCCACAGTCAGAAACTGAACTGCCACATGAGGACAGCAAAGATTCCAAAACTAAGATGGATACCCTAAAAAAGAGTTCTAAAAAATTGACTGATAATAACACTGTTTGGTCTCAAGTTGCTGGTATGGAAAAACATACTACTAAAGATAATCTCTCTGCTGGAAATGATCAATCGATGGTGGAAAACAATGTTATGGCTAATTATGATTCTGGAAATTTTGAAGCAAAGAATGAATGTGAGAATCGAACTAGTAAGGAGGTTGACGAAGTTTTTCCAAGCCTATCTACACCAATTGATTGCTCTGAGGCTGCCCAAAAGCCTGGCGGAAGCGCTGAAACTAATAAAACAAGTCCAACACTGTTTCACTGGATTAAACGGTGGTGGCCATTTGGGAAAAACAATGAAAAATATGATGATTTGACCGCTCATCAAAGGGAGGGAGTTAGTCATGTTGAGGATTCCAAGTTATCTGAACTGGAGCAGACTGTTAGTCAATCTGAAGAGGTCAAATCATCTGAACTGGATCACACTGTAAGTCAATCTGAAGAACCCAAGCTACCAGAACTGAATCAGAATTCTGGTCATTCCGGAAAGCCTGAGTTAAAATATGATGATTTGACGGCTCATCAAAGGGAGGGAGTTAGTCATGTTGAGGATTCCAAGTTATCTGAACTGGTGCAAACTGTTAGTCAATCTGAAGAGGTCAAATCATCTGAACTGGATCACACTGTAAGTCAATCTGAAGAGCCCAAGCTACCAGAACTGAATCAGAATGTTGGTCTTTCCGGAAAGCCTGAGTTATTTTCCAGTGCTGCCTTTTGGAATGATATGGAATCTTTTATGTTCGCACCCAAAGGATCACTTCTTTTCTCCCAGTCAAGAAGCAGGGAGGATGTTGCGCAAAGGTTACAAAATGGAGGACCCCTGCTTCTCAGATCACTCCCCAAAAAAGATATCCTTCAATTGGTTGATATGTTAATAGCAGACAAAAAATGGTTGGAGGAAAGGCCGTCCCAAACATTTCCTTTTAAGCTAACTCAGCCAGTTCATAAGAATTTATCGGTGGACCAATCCCGTAGTGGCAATGGTTTGAGATCTATCTTTCTACGCAGATCATCACAATCTCTAGAACATGATGTGGGGAAACACAATCAGAGTGTTCCTCATACACCAATTTCTGCAGCGGCTGTTGAAACAAAACATTTTGAGAGATCTAGAAATGATATATTAGATGACTGTCAGAAACTTGTTAATGAGATATTAAGGGAACACCCAGAGGGATATAATATTGGTGCTTTCCGAAGACTATTTGTTGATAAGTATGGCTATCATCTTGATTTACAGAAGCTTGGTTATCAAAAATTGGTAGCCTTGCTACAGATAATGCCTGGGGTTAAATTTGAGTCTACTTACATTTATCCTTCTGTTCCTGCTGTATGTGATTCTGATTCGGATACTTCTATCCTCAAAACTAAAGCAACCGCTGATAATCATGCAGTCTCCAACTCAGATAGCGAATTATCTGAGTCAACCCTGAAAGATGATGACATGGAATCTGAATGGGAGGAGTTGGGTCCTGTTTCTATAAAAAATTTTGACAAGAGTGGTTTGGGTTATGAACTTGTATCAGATGACGATACTTCTGCATCTGAAGGAGACCACTCTTATTTAACTCAATCTGAAGAGCAGACGAAATCAATTTGTAATGAACGGGACAGTTCGTTTTGGGAAACTATGGATTTGTGGCACAGCTGCAAGGAAGGAGAGAATGGTGTCAAGAAGTCAGACAATGTTGACAGCTTGAGTGTTTCTGTGGCTCATATTTTAAATTCATCCCCTGACCCAGCCATTGTTTTCCCTTCCAAAACATCAAATTGCAGAGATAAACAAAGGTCTTACAAGAACTATTCTTTCGTTGTTGATCAAGTCTTACATGACAAGGACAAGCTGATTGGTGACTTCAAGAAAACTGATGAGTCAATGCAAAAACAGAGTAGTTCCTGCTGCAAGTAG 3552 0.4406 MAIVSRLFVIPAARPVLAKTIFFMSSFSARTFEPCEPSPSPARSEEESRNVRVWAWWDFKNCHVPPDFDASKVAPAIMEAVRANGIKGPLNITAFGDVQQLRRDHQEALAYTGVRFIHVSDEGRNSADILVDLMYWVSQNPPPAHIFLISGDRNFAGTLHRLRMSNYNILLATPEKTPSVLHSAATIAWMWDSLLNGENLTGKVLNHPPDGPLGSWYGSYKEPVTVADLVTEEPVTVAAPQATSLPNVEVCPSRSTVPKSVLSKICNILSLHPKGVGIDHLRAELLKIDVRLDKNWYGHKKFSRFLLSMPGVDLRSIGDGPLRVHLVPVESMEPCKNSSLESTVSDATNEEKRCAAAPKVNGEGKSKVRDADKKLSNATNEEKRCAVASKVNGEAKSKVRDADRKLSNATNEEKRCAAASKVNGEAKSKVRDADRKLANATNEEKRCAAASKVNGEVKSEVRDADRKLSNAERSMGDYLKSVQPGPSKGRPVEENGLRKSAVACDRFVDVANAPQSETELPHEDSKDSKTKMDTLKKSSKKLTDNNTVWSQVAGMEKHTTKDNLSAGNDQSMVENNVMANYDSGNFEAKNECENRTSKEVDEVFPSLSTPIDCSEAAQKPGGSAETNKTSPTLFHWIKRWWPFGKNNEKYDDLTAHQREGVSHVEDSKLSELEQTVSQSEEVKSSELDHTVSQSEEPKLPELNQNSGHSGKPELKYDDLTAHQREGVSHVEDSKLSELVQTVSQSEEVKSSELDHTVSQSEEPKLPELNQNVGLSGKPELFSSAAFWNDMESFMFAPKGSLLFSQSRSREDVAQRLQNGGPLLLRSLPKKDILQLVDMLIADKKWLEERPSQTFPFKLTQPVHKNLSVDQSRSGNGLRSIFLRRSSQSLEHDVGKHNQSVPHTPISAAAVETKHFERSRNDILDDCQKLVNEILREHPEGYNIGAFRRLFVDKYGYHLDLQKLGYQKLVALLQIMPGVKFESTYIYPSVPAVCDSDSDTSILKTKATADNHAVSNSDSELSESTLKDDDMESEWEELGPVSIKNFDKSGLGYELVSDDDTSASEGDHSYLTQSEEQTKSICNERDSSFWETMDLWHSCKEGENGVKKSDNVDSLSVSVAHILNSSPDPAIVFPSKTSNCRDKQRSYKNYSFVVDQVLHDKDKLIGDFKKTDESMQKQSSSCCK 1183
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00550 1183 MobiDBLite consensus disorder prediction 396 430 - -
Vimu7g00550 1183 CDD LOTUS 923 978 - -
Vimu7g00550 1183 MobiDBLite consensus disorder prediction 456 473 - -
Vimu7g00550 1183 Coils Coil 423 443 - -
Vimu7g00550 1183 Coils Coil 454 474 - -
Vimu7g00550 1183 CDD PIN_limkain_b1_N_like 52 174 - -
Vimu7g00550 1183 MobiDBLite consensus disorder prediction 450 539 - -
Vimu7g00550 1183 Pfam OST-HTH/LOTUS domain 923 977 IPR025605 -
Vimu7g00550 1183 Pfam OST-HTH/LOTUS domain 259 322 IPR025605 -
Vimu7g00550 1183 ProSiteProfiles OST-type HTH domain profile. 257 328 IPR025605 -
Vimu7g00550 1183 MobiDBLite consensus disorder prediction 1012 1033 - -
Vimu7g00550 1183 Gene3D - 917 984 IPR041966 -
Vimu7g00550 1183 Pfam NYN domain 52 185 IPR021139 GO:0004540
Vimu7g00550 1183 ProSiteProfiles OST-type HTH domain profile. 922 996 IPR025605 -
Vimu7g00550 1183 MobiDBLite consensus disorder prediction 396 411 - -
Vimu7g00550 1183 MobiDBLite consensus disorder prediction 742 762 - -
Vimu7g00550 1183 MobiDBLite consensus disorder prediction 696 710 - -
Vimu7g00550 1183 MobiDBLite consensus disorder prediction 661 714 - -
Vimu7g00550 1183 MobiDBLite consensus disorder prediction 519 539 - -
Vimu7g00550 1183 MobiDBLite consensus disorder prediction 1056 1076 - -
Vimu7g00550 1183 PANTHER LIMKAIN B LKAP 42 932 IPR024768 GO:0005777|GO:0010468
Vimu7g00550 1183 Coils Coil 392 412 - -
Vimu7g00550 1183 MobiDBLite consensus disorder prediction 357 380 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vimu7g00550 Vimu-Chr7 5632282 5636173 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00550 55 197 C2H2 Transcription Factor Family AT5G61190 41.379 1.17e-31 132
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00550 - - var:108320919 2147.47