Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00544 ATGGCGGCAGGGCGAAAAAGTGTTCCGCTCAAAGGGGAATTTTTCAAACACAGTTCAACAAAGAGGTCCGATCACTATAAGAATGGCTCTATCGGCGTGGAAGTGGGTGGATCTCGCAGCCATCACTTTGCTCGTTCCGATGAGCCTCGTGGTGGGAAAGAGGAGAGAGAGCAAGGTGAGATCTGTGTTGAAGATGAGGAATATGAGGTTGCCTATGGTTTGCCACCGCCACAGAAGAAAAGGAAGTTTTCTCCAATCGTATGGGACCTAGCAGAGAAGGAAGAAAGAATTTTGTCCGAGAGTAGGATCTCGGATACTGTTGCTCTGTCTCCTCCTCGTCCATCTGTACTGAGCACTCCTGGAGCCAACGGTCTTGGTTCAGATGTCCTTTTGGAGGAATCTTTGCCAGATTCTGGAAGCTGTAGACAGGATGTGGAGGAAGAGAAGGATGTGCAAGAATGGACTATCAGAAAGTCAAGATGGGCTACTGATGATGGCCCCTCACCCATGGCTGCTGATGATAAATTCAATCATGTCAAAGGCAGCTCCAGTCCTGAAATTGGTGAATTCCATCGCGGTGGATCTTCAGAAAGCACCGTCACTAGATCGTCAGGAAGCACGGGGAGAGATCAATATCTTGGACTTTCTACTGATGACGCCGATTCTGAAAGGGATTTCCATATAGACCCCGTGGTCGATGTTGAGGGACCAAGTGACGTTGGTGATTGTCCATCGGATTCTGAAGAGAGTGATGGATTGATGCAAGTGCAGAGAAATATAAATATGCTTCACAGTTGCAGAAGTGTGTGCGAGTTTGAGATGATTAAGAAAATAAATGAAGGAACTTACGGTGTTGTCTATAAAGCTAGGGATAAGAAAACTGGAGAATTAGTCGCATTGAAGAAGGTGAAGATGAATATAGAGAGGGATGGCTTTCCTATGTCATCCTTGAGGGAAATAAACATTCTCTTGTCTTTTAACCACCCCTCCATTGTGAATGTTAAAGAAGTAGTTGTAGATGATTTTGACGGTACTTTTATGGTAATGGAATACATGGAGTATGACCTCAAGGGTATGATGGAGGTTAAGAAACAGCCTTTTAGCATTAGCGAAATTAAATCCTTGGTAAAGCAACTTCTTGAAGGTGTCAAGTATCTCCATGATAACTGGGTTATCCATAGGGACTTGAAGTCATCTAACATTCTGCTGAACCATGACGGGGAGCTTAAAATATGCGATTTTGGGTTGTCAAGGCAGTATGGAAGCCCTCTGAAGCCATATACTCCTGTTGTGGTTACACTATGGTACAGGGCACCTGAACTTTTGTTGGGTGCTAAAGAATATTCAACAGCAATTGACATGTGGTCAGTGGGTTGCATAATGGCTGAATTAATTTCCAAGGAGCCTCTGTTCAGGGGTAAAAGTGAACTTGAACAACTTGATCAGATTTTTCGAACCCTGGGTACACCAGATGAGAAAATTTGGCCTGGATTATCCAAATTACCTGGGGCTAAAGCAAAATTTGTTAAGCAACCGTTTAATATGTTACGGAAGAAGTTTCCAGCTGCATCATTTACCGGTTTGCCAGTTTTATCTGAGCTGGGGTTTGACTTGTTGAAGAAGCTTTTAACTTACGACCCCGAAGAGAGGATAACTGCTGAAGATGCTCTACTTCATGATTGGTTCTATGAAGCCCCTCCTCCCAAATCTGATTTCAAGCCTATTTTTCCTTCTTGGAGGTGCTAG 1746 0.4393 MAAGRKSVPLKGEFFKHSSTKRSDHYKNGSIGVEVGGSRSHHFARSDEPRGGKEEREQGEICVEDEEYEVAYGLPPPQKKRKFSPIVWDLAEKEERILSESRISDTVALSPPRPSVLSTPGANGLGSDVLLEESLPDSGSCRQDVEEEKDVQEWTIRKSRWATDDGPSPMAADDKFNHVKGSSSPEIGEFHRGGSSESTVTRSSGSTGRDQYLGLSTDDADSERDFHIDPVVDVEGPSDVGDCPSDSEESDGLMQVQRNINMLHSCRSVCEFEMIKKINEGTYGVVYKARDKKTGELVALKKVKMNIERDGFPMSSLREINILLSFNHPSIVNVKEVVVDDFDGTFMVMEYMEYDLKGMMEVKKQPFSISEIKSLVKQLLEGVKYLHDNWVIHRDLKSSNILLNHDGELKICDFGLSRQYGSPLKPYTPVVVTLWYRAPELLLGAKEYSTAIDMWSVGCIMAELISKEPLFRGKSELEQLDQIFRTLGTPDEKIWPGLSKLPGAKAKFVKQPFNMLRKKFPAASFTGLPVLSELGFDLLKKLLTYDPEERITAEDALLHDWFYEAPPPKSDFKPIFPSWRC 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00544 581 CDD STKc_CDC2L1 266 562 IPR045267 GO:0004674|GO:0005524|GO:0006468
Vimu7g00544 581 SUPERFAMILY Protein kinase-like (PK-like) 266 567 IPR011009 -
Vimu7g00544 581 ProSiteProfiles Protein kinase domain profile. 272 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g00544 581 Pfam Protein kinase domain 272 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g00544 581 ProSitePatterns Serine/Threonine protein kinases active-site signature. 391 403 IPR008271 GO:0004672|GO:0006468
Vimu7g00544 581 MobiDBLite consensus disorder prediction 40 59 - -
Vimu7g00544 581 Gene3D Transferase(Phosphotransferase) domain 1 354 573 - -
Vimu7g00544 581 MobiDBLite consensus disorder prediction 194 213 - -
Vimu7g00544 581 FunFam Cyclin-dependent kinase G-2 354 581 - -
Vimu7g00544 581 MobiDBLite consensus disorder prediction 1 61 - -
Vimu7g00544 581 MobiDBLite consensus disorder prediction 10 28 - -
Vimu7g00544 581 MobiDBLite consensus disorder prediction 106 222 - -
Vimu7g00544 581 MobiDBLite consensus disorder prediction 106 122 - -
Vimu7g00544 581 Gene3D Phosphorylase Kinase; domain 1 254 353 - -
Vimu7g00544 581 SMART serkin_6 272 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g00544 581 PANTHER CELL DIVISION PROTEIN KINASE 271 566 - -
Vimu7g00544 581 FunFam cyclin-dependent kinase G-2 isoform X1 257 353 - -
Vimu7g00544 581 MobiDBLite consensus disorder prediction 231 250 - -
Vimu7g00544 581 MobiDBLite consensus disorder prediction 139 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00544 Vimu-Chr7 5569548 5575691 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00544 267 568 Core Cell Cycle Gene Families AT5G10270 44.654 9.15e-86 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Vimu7g00544 Pkinase 1.1e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00544 K08818 - gmx:100788840 919.072