Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00541 ATGGCCTCTTGCACTTCCCTTTCTCTTTGTCCTCACATCTTCTGTTGCCGCCACCGGCCTTACCCTACGCGCCGTTCTCTTTCTTGCTCTCTCTCCTCTTCTTCCATCCCCGATACGGATGGCCCTAAAGTTCTGCGTAAAAGATCGAGAAGGATAGAAGGTCCTAGAAAAAGTATGGAAGATTCTGTTCAACGCAAGATGGAGGAATTTTATGAAGGACGGGATGGGCCACCCCTTAGAGTTCTTCCCATTGGTGGGTTGGGTGAAATTGGGATGAATTGCATGCTTGTTGGCAACTATGATCGCTATATTCTCATTGATGCTGGTGTCATGTTTCCAGACTATGATGAGCTTGGGGTCCAGAAGATCATACCTGATACAACGTTTATAAGAAAATGGAGACACAAAATTGAAGCAGTTATTATAACACATGGTCATGAAGATCATATTGGTGCATTGCCTTGGGTCATCCCGGCACTAGATTCTCATACGCCAATTTTTGCGTCATCCTTTACGATGGAGCTTATAAGGAAGCGTTTGAAGGATCATGGTATTTTTGTTCCATCACGACTGAAAGTTTTTAGAACGAGGAAGAAGTTTATGGCAGGGCCATTTGAAATTGAGCCTATCACAGTGACTCATTCTATTCCTGATTGCTGTGGCCTTGTGCTCCGATGTTCTGATGGTACCATTCTTCACACTGGGGATTGGAAGATTGATGAAAAACCGTTAGATGGAAAAGTTTTTGATCGTGAAGCTCTAGAGGAACTCTCTAAAGAAGGAGTCACGTTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGAAGGACAACCAGTGAATCTGTTGTGGCAGATGCGCTATTGAGGAATATTTCAGCTGCTAAAGGACGTGTTATAACGACCCAGTTTGCATCAAATATACATCGTCTTGGAAGTGTAAAAGCTGCTGCTGATTTAACTGGTAGAAAGTTGGTATTTGTTGGCATGTCACTAAGAACATATTTAGATGCAGCTTGGAAGGATGGAAAAGCTCCAATTGATCCATCTACTCTGGTGAAAGCGGAGGATATTGACGCATATGCACCAAAAGATTTGCTAATTGTTACAACGGGGTCTCAAGCAGAACCACGTGCTGCCTTAAATCTTGCATCTTATGGAAGTAGTCATTCTATCAAGCTGACAAAGGAGGATATTGTGTTATATTCAGCCAAGGTTATCCCTGGTAACGAGTCTCGTGTTATGGAAATGCTAAACCGCATATCAGATATTGGATCAACTATAATTATGGGGAAGAATGAATGTCTGCACACATCTGGCCATGGGTATCGTGGAGAATTGGAGGAAGTGCTTAGAATTGTGAAGCCACAGCATTTTTTACCCATACATGGAGAACTCTTGTTCCTGAAGGAACATGAATTACTTGGAAAATCAACTGGCATTCGGCACACTACTGTTATTAAGAATGGAGAGATGCTTGGTGTTTCTCATTTGAGAAACAAAAGAGTCCTTTCCAATGGTTTCGCTTCACTTGGAAAAGAGAATTTCCAGTTGATGTATAGTGATGGTGAGAAAGCATTTGGTACATCAAGTGAACTCTTTATTGATGAAAGAATGAGAATTGCATTAGATGGCATCATAGTTGTTAGCATGGAGATATTTCGCCCACAAAATTTAGACAGTCCAGTTGAGAACACCTTAAAAGGAAAAATAAGAATTACCACAAGATGCCTGTGGCTTGACAAGGGCAAGCTGCTGGATGCACTCCATAAAGCTGCTCATGCTGCCCTTTCAAGCTGCCCTGCAAGCTGTCCACTGGCTCATATGGAAAGAATTGTGTCTGAGGTGTTGAGAAAAATGGTGAGGAAGTACAGTGGCAAGCGGCCTGAAGTTATTGTCATTGCTGTAGAAAATCCTGCAGCTGTTCTTGCTAATGAGATAAAGACGAAGCTGTCTGGAAAATTCCATGTGGATGGGGCACCGACATTGAGAAAAGTGCTGGATGGACGTGGGAAAGAAAATCAGAGAACCAAAACACAAATAAGAGCTGACAAGTGGATTCAAGAAGTGGAGAAGATCTTCATGGCCATGGGTGTCGTGAATAGAGGAAGAAATAGGGGCATGTGCCCGAGAATTGCACCATGGGACAAAATGTTCAACAAGGACAACAAGGTGGCAATACTCAAGTCGAAGGTTATTGTTCTATTATTTGGTGCAGATCGAATTGATGTAGGGAGTATACTACCTATTGAAGACATTGCTATCTCAAGTGGAGTTGAGGATGACTTGTCTGATGCGGAGGTTTCAGACGACTTTTTTAAACCACTTGTTGGATCCTCTCCAGTTGAGAAGTCAATTAAAGCTAACAATGGTTATGTACCACAAATGGAGAAGTCATCCCCTTCGAAGGATGGTAGTTCTGAAGACACCGAAGAATGCAATTCTGTAAATACATCAGATTCTGAACCTAAATCTTCAAAATCAGCAAAAAGAAATAAATGGAAACATGATGAAGTGAAGAAGCTGATTGGCATGCGTGGGGAACTGAATGACCGATTTCAAGTTGTTAAAGGAAGGATGGCCCTCTGGGAAGAAATATCTCAGAATTTGTTGTCTAATGGGATCAGCAGAAGTCCCGGCCAGTGTAAATCTCTGTGGACATCTTTGTTACAGAAATACGAGCCTCTATATTGGATGTTGTCGAAAGGGGAACCAATCCTTATGCTGACATTTTTAACTTGTCCAAATTTTGTTCATAACCAACAACTCACTGAGTGGGCCACTATTTCTCATGCCTTGGAACTGCATTTTGGCCCTTCGACTTATGCCTACCATCAGGCAGAACTGTTCAAGTTTCATCTTGGCTCCATAATATATTATCAAGCAGCTTTTGGAAAGCTCTGCAACTGTGTCACGAGCCTCCCCTAG 2928 0.4228 MASCTSLSLCPHIFCCRHRPYPTRRSLSCSLSSSSIPDTDGPKVLRKRSRRIEGPRKSMEDSVQRKMEEFYEGRDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWRHKIEAVIITHGHEDHIGALPWVIPALDSHTPIFASSFTMELIRKRLKDHGIFVPSRLKVFRTRKKFMAGPFEIEPITVTHSIPDCCGLVLRCSDGTILHTGDWKIDEKPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTTSESVVADALLRNISAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHSIKLTKEDIVLYSAKVIPGNESRVMEMLNRISDIGSTIIMGKNECLHTSGHGYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTTVIKNGEMLGVSHLRNKRVLSNGFASLGKENFQLMYSDGEKAFGTSSELFIDERMRIALDGIIVVSMEIFRPQNLDSPVENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPASCPLAHMERIVSEVLRKMVRKYSGKRPEVIVIAVENPAAVLANEIKTKLSGKFHVDGAPTLRKVLDGRGKENQRTKTQIRADKWIQEVEKIFMAMGVVNRGRNRGMCPRIAPWDKMFNKDNKVAILKSKVIVLLFGADRIDVGSILPIEDIAISSGVEDDLSDAEVSDDFFKPLVGSSPVEKSIKANNGYVPQMEKSSPSKDGSSEDTEECNSVNTSDSEPKSSKSAKRNKWKHDEVKKLIGMRGELNDRFQVVKGRMALWEEISQNLLSNGISRSPGQCKSLWTSLLQKYEPLYWMLSKGEPILMLTFLTCPNFVHNQQLTEWATISHALELHFGPSTYAYHQAELFKFHLGSIIYYQAAFGKLCNCVTSLP 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00541 975 MobiDBLite consensus disorder prediction 788 833 - -
Vimu7g00541 975 SMART Lactamase_B_5a 91 288 IPR001279 -
Vimu7g00541 975 Gene3D - 83 495 IPR036866 -
Vimu7g00541 975 SUPERFAMILY Metallo-hydrolase/oxidoreductase 79 493 IPR036866 -
Vimu7g00541 975 Gene3D - 280 430 IPR042173 -
Vimu7g00541 975 PANTHER RIBONUCLEASE J 1 894 - -
Vimu7g00541 975 Gene3D - 834 894 - -
Vimu7g00541 975 CDD GT1 832 894 - -
Vimu7g00541 975 CDD RNaseJ_MBL-fold 82 493 - -
Vimu7g00541 975 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 435 477 IPR011108 -
Vimu7g00541 975 Pfam Myb/SANT-like DNA-binding domain 831 894 IPR044822 -
Vimu7g00541 975 Pfam Beta-lactamase superfamily domain 102 238 IPR001279 -
Vimu7g00541 975 ProSiteProfiles Myb-like domain profile. 826 890 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00541 Vimu-Chr7 5548217 5559173 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00541 834 894 Trihelix Transcription Factor Family AT3G25990 34.426 2.53e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vimu7g00541 Lactamase_B_2 1.6e-10 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00541 - - gmx:100814619 1473.37