LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu7g00541	ATGGCCTCTTGCACTTCCCTTTCTCTTTGTCCTCACATCTTCTGTTGCCGCCACCGGCCTTACCCTACGCGCCGTTCTCTTTCTTGCTCTCTCTCCTCTTCTTCCATCCCCGATACGGATGGCCCTAAAGTTCTGCGTAAAAGATCGAGAAGGATAGAAGGTCCTAGAAAAAGTATGGAAGATTCTGTTCAACGCAAGATGGAGGAATTTTATGAAGGACGGGATGGGCCACCCCTTAGAGTTCTTCCCATTGGTGGGTTGGGTGAAATTGGGATGAATTGCATGCTTGTTGGCAACTATGATCGCTATATTCTCATTGATGCTGGTGTCATGTTTCCAGACTATGATGAGCTTGGGGTCCAGAAGATCATACCTGATACAACGTTTATAAGAAAATGGAGACACAAAATTGAAGCAGTTATTATAACACATGGTCATGAAGATCATATTGGTGCATTGCCTTGGGTCATCCCGGCACTAGATTCTCATACGCCAATTTTTGCGTCATCCTTTACGATGGAGCTTATAAGGAAGCGTTTGAAGGATCATGGTATTTTTGTTCCATCACGACTGAAAGTTTTTAGAACGAGGAAGAAGTTTATGGCAGGGCCATTTGAAATTGAGCCTATCACAGTGACTCATTCTATTCCTGATTGCTGTGGCCTTGTGCTCCGATGTTCTGATGGTACCATTCTTCACACTGGGGATTGGAAGATTGATGAAAAACCGTTAGATGGAAAAGTTTTTGATCGTGAAGCTCTAGAGGAACTCTCTAAAGAAGGAGTCACGTTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGAAGGACAACCAGTGAATCTGTTGTGGCAGATGCGCTATTGAGGAATATTTCAGCTGCTAAAGGACGTGTTATAACGACCCAGTTTGCATCAAATATACATCGTCTTGGAAGTGTAAAAGCTGCTGCTGATTTAACTGGTAGAAAGTTGGTATTTGTTGGCATGTCACTAAGAACATATTTAGATGCAGCTTGGAAGGATGGAAAAGCTCCAATTGATCCATCTACTCTGGTGAAAGCGGAGGATATTGACGCATATGCACCAAAAGATTTGCTAATTGTTACAACGGGGTCTCAAGCAGAACCACGTGCTGCCTTAAATCTTGCATCTTATGGAAGTAGTCATTCTATCAAGCTGACAAAGGAGGATATTGTGTTATATTCAGCCAAGGTTATCCCTGGTAACGAGTCTCGTGTTATGGAAATGCTAAACCGCATATCAGATATTGGATCAACTATAATTATGGGGAAGAATGAATGTCTGCACACATCTGGCCATGGGTATCGTGGAGAATTGGAGGAAGTGCTTAGAATTGTGAAGCCACAGCATTTTTTACCCATACATGGAGAACTCTTGTTCCTGAAGGAACATGAATTACTTGGAAAATCAACTGGCATTCGGCACACTACTGTTATTAAGAATGGAGAGATGCTTGGTGTTTCTCATTTGAGAAACAAAAGAGTCCTTTCCAATGGTTTCGCTTCACTTGGAAAAGAGAATTTCCAGTTGATGTATAGTGATGGTGAGAAAGCATTTGGTACATCAAGTGAACTCTTTATTGATGAAAGAATGAGAATTGCATTAGATGGCATCATAGTTGTTAGCATGGAGATATTTCGCCCACAAAATTTAGACAGTCCAGTTGAGAACACCTTAAAAGGAAAAATAAGAATTACCACAAGATGCCTGTGGCTTGACAAGGGCAAGCTGCTGGATGCACTCCATAAAGCTGCTCATGCTGCCCTTTCAAGCTGCCCTGCAAGCTGTCCACTGGCTCATATGGAAAGAATTGTGTCTGAGGTGTTGAGAAAAATGGTGAGGAAGTACAGTGGCAAGCGGCCTGAAGTTATTGTCATTGCTGTAGAAAATCCTGCAGCTGTTCTTGCTAATGAGATAAAGACGAAGCTGTCTGGAAAATTCCATGTGGATGGGGCACCGACATTGAGAAAAGTGCTGGATGGACGTGGGAAAGAAAATCAGAGAACCAAAACACAAATAAGAGCTGACAAGTGGATTCAAGAAGTGGAGAAGATCTTCATGGCCATGGGTGTCGTGAATAGAGGAAGAAATAGGGGCATGTGCCCGAGAATTGCACCATGGGACAAAATGTTCAACAAGGACAACAAGGTGGCAATACTCAAGTCGAAGGTTATTGTTCTATTATTTGGTGCAGATCGAATTGATGTAGGGAGTATACTACCTATTGAAGACATTGCTATCTCAAGTGGAGTTGAGGATGACTTGTCTGATGCGGAGGTTTCAGACGACTTTTTTAAACCACTTGTTGGATCCTCTCCAGTTGAGAAGTCAATTAAAGCTAACAATGGTTATGTACCACAAATGGAGAAGTCATCCCCTTCGAAGGATGGTAGTTCTGAAGACACCGAAGAATGCAATTCTGTAAATACATCAGATTCTGAACCTAAATCTTCAAAATCAGCAAAAAGAAATAAATGGAAACATGATGAAGTGAAGAAGCTGATTGGCATGCGTGGGGAACTGAATGACCGATTTCAAGTTGTTAAAGGAAGGATGGCCCTCTGGGAAGAAATATCTCAGAATTTGTTGTCTAATGGGATCAGCAGAAGTCCCGGCCAGTGTAAATCTCTGTGGACATCTTTGTTACAGAAATACGAGCCTCTATATTGGATGTTGTCGAAAGGGGAACCAATCCTTATGCTGACATTTTTAACTTGTCCAAATTTTGTTCATAACCAACAACTCACTGAGTGGGCCACTATTTCTCATGCCTTGGAACTGCATTTTGGCCCTTCGACTTATGCCTACCATCAGGCAGAACTGTTCAAGTTTCATCTTGGCTCCATAATATATTATCAAGCAGCTTTTGGAAAGCTCTGCAACTGTGTCACGAGCCTCCCCTAG	2928	0.4228	MASCTSLSLCPHIFCCRHRPYPTRRSLSCSLSSSSIPDTDGPKVLRKRSRRIEGPRKSMEDSVQRKMEEFYEGRDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWRHKIEAVIITHGHEDHIGALPWVIPALDSHTPIFASSFTMELIRKRLKDHGIFVPSRLKVFRTRKKFMAGPFEIEPITVTHSIPDCCGLVLRCSDGTILHTGDWKIDEKPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTTSESVVADALLRNISAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHSIKLTKEDIVLYSAKVIPGNESRVMEMLNRISDIGSTIIMGKNECLHTSGHGYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTTVIKNGEMLGVSHLRNKRVLSNGFASLGKENFQLMYSDGEKAFGTSSELFIDERMRIALDGIIVVSMEIFRPQNLDSPVENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPASCPLAHMERIVSEVLRKMVRKYSGKRPEVIVIAVENPAAVLANEIKTKLSGKFHVDGAPTLRKVLDGRGKENQRTKTQIRADKWIQEVEKIFMAMGVVNRGRNRGMCPRIAPWDKMFNKDNKVAILKSKVIVLLFGADRIDVGSILPIEDIAISSGVEDDLSDAEVSDDFFKPLVGSSPVEKSIKANNGYVPQMEKSSPSKDGSSEDTEECNSVNTSDSEPKSSKSAKRNKWKHDEVKKLIGMRGELNDRFQVVKGRMALWEEISQNLLSNGISRSPGQCKSLWTSLLQKYEPLYWMLSKGEPILMLTFLTCPNFVHNQQLTEWATISHALELHFGPSTYAYHQAELFKFHLGSIIYYQAAFGKLCNCVTSLP	975

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu7g00541	975	MobiDBLite	consensus disorder prediction	788	833	-	-
	Vimu7g00541	975	SMART	Lactamase_B_5a	91	288	IPR001279	-
	Vimu7g00541	975	Gene3D	-	83	495	IPR036866	-
	Vimu7g00541	975	SUPERFAMILY	Metallo-hydrolase/oxidoreductase	79	493	IPR036866	-
	Vimu7g00541	975	Gene3D	-	280	430	IPR042173	-
	Vimu7g00541	975	PANTHER	RIBONUCLEASE J	1	894	-	-
	Vimu7g00541	975	Gene3D	-	834	894	-	-
	Vimu7g00541	975	CDD	GT1	832	894	-	-
	Vimu7g00541	975	CDD	RNaseJ_MBL-fold	82	493	-	-
	Vimu7g00541	975	Pfam	Zn-dependent metallo-hydrolase RNA specificity domain	435	477	IPR011108	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu7g00541	Vimu-Chr7	5548217	5559173	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu7g00541	834	894	Trihelix Transcription Factor Family	AT3G25990	34.426	2.53e-08	55.5

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	Trihelix	Vimu7g00541		Lactamase_B_2	1.6e-10	CL0381

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu7g00541	-		-	gmx:100814619	1473.37

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