Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00539 ATGAGCGACGTCGGAGGCGATCTGCATCTTAGAGGTCCACGTGACGAGATTAGTGTAGCTAGAGTTCCGGCGGTTACGAAGCCAGTGGGTGAGGCTGGCGTCAGGGACAAATTCGTAAACGAGAAAGATGACGTTGCTGGAGACGGAGGCACCGAGGAGCTTGACGAGGCTGCTGTGGTGACTCCGACAGATGATGGCGAGGTGGCGGCTAAGCTCCGGGAGGTCGATTTGTTGGCGAAAGTTGCGGCGAGAAACAAGCATCACGGCGGCAGATTAGGCAACACCAGGACAAGGAAGAGAGGTGTGCCTCAACAACCGCTTTTGAATTACACAGTGGAGGCTATTGGGACACTTTCTTGTACAAATGATGGCATATATCTTGTTGGAGGAGCTTTATCTGGATATGTTTATCTATGGGATGTGACCAGTGGAAAATTGTTGAAGACTTGGAGGGCTCATAATAAATGTTTAAACTGCATGTTATTTTCATTTGACAATTCTCTTCTCATTTCTAGCTCAGATGATGGAATGATTTGTGTTTGGTCCATGATTAGTTTGTTAGACATAGAAGAAACGAGAAGTTCGCCGCCTCCATTACATTATTTGTCAGGACATATATCCTCCATAACAGGTCTTTTAACTGCACCAAATAGTTACTACTCGATTTTAATATCAAGTTCCCTTGATGGCACGTGCAAGGTTTGGGATTTTATCTCAGGAAAGCATATGCAAACTCAAGTTTATCCTTTTGCCATAACTTCCATTGCCCTTCACCAAAGAGAAAATCTTTTGTTTTGCGGAACAGAAAAAGGAATAATATTTGTCGAGAAGCTCGATGTTGGTGGTGGAGAAGGTCCTTTTCTTGTCATTAAAGGGCAGCCACTTGAACTGAAAGGACACAGTGGAGCCATTACTGCCTTAACCTCATCTCGATCATTCCTAATATCTGCCTCTGAAGATTGTTCGATTTGCCTTTGGGACATCTTCAGTTGGGAAATCACTCGAAGGTTTAGTCTCCAAAAAGCAGGGAAAGTAACCAATCTTGTGGTGGTTTCACGATCTTCGTTACTTTCTACATCAAAAAACAGGAGAGTCTCGAATGAATATATTATTTCTCCACTTGACAAGTATCCGCAAATGTCCGACTCAATCAAGGGAACTCTCCATTCCTCATTATATAGAGGAAATCAAACCTGCAGTGATTTGAAATGTTCTGAATTATTGAAACAGAAGATTTTTGATACACAGAAAGTAGATGTACCAACCATCACAACCTTGCAAATGAGAGTGGAAGCAAGTGTAAAGAATCATGTATGGGCAACAAACATGACAAAACATGTCATGGTGATAAACAAACAGTTGAAGTCAACACTATTAGGCATGATGCAACATAGATTGTTTCGTCCAAACAACAACAACAACTTGCGAAAAACTAGTAGAAAGAAACCCAAAATTTAG 1458 0.4204 MSDVGGDLHLRGPRDEISVARVPAVTKPVGEAGVRDKFVNEKDDVAGDGGTEELDEAAVVTPTDDGEVAAKLREVDLLAKVAARNKHHGGRLGNTRTRKRGVPQQPLLNYTVEAIGTLSCTNDGIYLVGGALSGYVYLWDVTSGKLLKTWRAHNKCLNCMLFSFDNSLLISSSDDGMICVWSMISLLDIEETRSSPPPLHYLSGHISSITGLLTAPNSYYSILISSSLDGTCKVWDFISGKHMQTQVYPFAITSIALHQRENLLFCGTEKGIIFVEKLDVGGGEGPFLVIKGQPLELKGHSGAITALTSSRSFLISASEDCSICLWDIFSWEITRRFSLQKAGKVTNLVVVSRSSLLSTSKNRRVSNEYIISPLDKYPQMSDSIKGTLHSSLYRGNQTCSDLKCSELLKQKIFDTQKVDVPTITTLQMRVEASVKNHVWATNMTKHVMVINKQLKSTLLGMMQHRLFRPNNNNNLRKTSRKKPKI 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00539 485 ProSiteProfiles Trp-Asp (WD) repeats profile. 297 336 IPR001680 GO:0005515
Vimu7g00539 485 Gene3D - 291 456 IPR015943 GO:0005515
Vimu7g00539 485 SMART WD40_4 290 327 IPR001680 GO:0005515
Vimu7g00539 485 SMART WD40_4 103 140 IPR001680 GO:0005515
Vimu7g00539 485 SMART WD40_4 239 277 IPR001680 GO:0005515
Vimu7g00539 485 SMART WD40_4 143 182 IPR001680 GO:0005515
Vimu7g00539 485 SMART WD40_4 195 236 IPR001680 GO:0005515
Vimu7g00539 485 ProSiteProfiles Trp-Asp (WD) repeats profile. 202 245 IPR001680 GO:0005515
Vimu7g00539 485 ProSiteProfiles Trp-Asp (WD) repeats profile. 108 149 IPR001680 GO:0005515
Vimu7g00539 485 SUPERFAMILY WD40 repeat-like 112 365 IPR036322 GO:0005515
Vimu7g00539 485 PRINTS G protein beta WD-40 repeat signature 169 183 IPR020472 -
Vimu7g00539 485 PRINTS G protein beta WD-40 repeat signature 314 328 IPR020472 -
Vimu7g00539 485 PRINTS G protein beta WD-40 repeat signature 223 237 IPR020472 -
Vimu7g00539 485 Pfam WD domain, G-beta repeat 144 182 IPR001680 GO:0005515
Vimu7g00539 485 Pfam WD domain, G-beta repeat 198 236 IPR001680 GO:0005515
Vimu7g00539 485 Pfam WD domain, G-beta repeat 296 327 IPR001680 GO:0005515
Vimu7g00539 485 PANTHER WD-REPEAT PROTEIN 18 105 463 IPR045227 -
Vimu7g00539 485 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 202 236 - -
Vimu7g00539 485 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 297 328 - -
Vimu7g00539 485 ProSiteProfiles Trp-Asp (WD) repeats profile. 150 183 IPR001680 GO:0005515
Vimu7g00539 485 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 150 183 - -
Vimu7g00539 485 ProSitePatterns Trp-Asp (WD) repeats signature. 314 328 IPR019775 -
Vimu7g00539 485 Gene3D - 79 275 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00539 Vimu-Chr7 5533700 5539232 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00539 96 328 U-box Gene Family AT2G33340 23.552 7.37e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00539 K14829 - gmx:102662801 517.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00539 7 5533700 5539232 Vimu7g00539 7 5533700 5539232 ECH