Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00534 ATGGAAACCAAACGCATTCCAATGGATATGGTCATAGATTCTGTCTCCGGTGCGCACTTCTCCGGTTGGCAACCTTCAACGACGTCGTCTTCTTCTCCAACTTCCTCTCATCAACCCTTCATCATTGGTGTCGCTGGAGGCACTGCATCGGGGAAAACCACTGTGTGCGACATTATCATTCAGCAACTGCAAGATCACAGAGTTGTGCTCGTCTGTCAGGATTCATTCTACCGCGGTTTGACGAATGACGAGTTGAAACGCGTTCATGAGTATAACTTTGATCATCCTAATGCGTTTGACACAGAGCAACTAGTAGAAACCCTCGGTCAGCTCAAATCTGGACAGTCGGTTCAGATTCCAATATATGATTTCAAGCTTCATCAGAGATCTACCGACAGATCTCGACAGGTTCCCTTCTTTCTGTCACGTTAA 432 0.4653 METKRIPMDMVIDSVSGAHFSGWQPSTTSSSSPTSSHQPFIIGVAGGTASGKTTVCDIIIQQLQDHRVVLVCQDSFYRGLTNDELKRVHEYNFDHPNAFDTEQLVETLGQLKSGQSVQIPIYDFKLHQRSTDRSRQVPFFLSR 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00534 143 Gene3D - 8 139 IPR027417 -
Vimu7g00534 143 PRINTS Uridine kinase signature 114 129 - -
Vimu7g00534 143 PRINTS Uridine kinase signature 69 80 - -
Vimu7g00534 143 PRINTS Uridine kinase signature 39 56 - -
Vimu7g00534 143 Pfam Phosphoribulokinase / Uridine kinase family 41 131 IPR006083 GO:0005524|GO:0016301
Vimu7g00534 143 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 130 IPR027417 -
Vimu7g00534 143 PANTHER URIDINE KINASE 29 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00534 Vimu-Chr7 5512327 5513414 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00534 8 137 PRT Gene Family AT3G27190 56.209 8.84e-53 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00534 K00876 - gmx:100816209 229.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00534 7 5512327 5513414 Vimu7g00534 7 5512327 5513414 ECH