Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00531 ATGGTTTCGACGAGACGGAGTGGATCTCTCTCTGCCAACAACTCCAAACGATCTTCCTCATCGGAAAACAAACCTCCTTCGCCGAAGCGTCAGAAGGTCGACAATGGTGGTTCGTCGGAGAAACCGGTGCCGACACCGCCGGAGAATTCGAAGGATTTACGTACTTCGGAGCCCGTGCCTGATCCTGGGGAATGTGGCTCTGCCGACGTTCAGATCGCCGGAGCGGGTTCCGCCGATGGAGTGAGCTCCGGCAAGGTCGACGCTACGCCGGCTGTGCCTGTCACGGCACCGATTGCTGATGCCGCATGTCCGTCCTTCTCTTCGTGGAGTGTGTATCAGAAACAGATTCCGAATATCGAGGGAGGACCGTGGTGCAGGTTCTTGTCTCAGTCTGCACAGAATCCTAATGTTGCTGTTTGCATACCCAATTTCACGATTGGTTCTAATAGAAGTTGCAACTTTGCACTGAAGGATCAGACTATAAGTGGAAATTTATGCAAGATCAAGCACACGCAGCGCGATGGAAGTGTTGTAGCTGTGCTAGAAAGTACGGGTAGCAAAGGATCTGTGCTAGTAAATGGAACGCATGTCAAGAAGAATACCAGCTGTGTGCTTAACTCGGGTGATGAAGTGGTTTTTGGTGTTCTTGGAAATCATTCTTATATTTTCCAGCAACTTAATACTGAGGTTGCAATTAGGGGTGCGGAAGTTCCAAGTGGTGTTGGGAAATATCTGCAGCTTGAAAGGAAAAGTGGAGACCCTTCAGCTGTGGCCGGGGCCTCTATTTTGGCTTCTCTTTCCATCAAACAGGACCTTACAAGATGGAAATCTCCAACTCATACCTCTAGTAAACCTCACCTGGGTACTGATCGCTCTAGTCATCCTATTCATGATAGTACAGAAATTGAGCTTGATGCCTCAGAGTCAACTCCAAATGTGCATACTGATAAAGCAGAAGATGCTCAAACAAATGAGAAGAATTCAACGATGGATTGCAATCCGGATGCTGGTGCAGAGGCAGGCAATGTAAAACTCTCTGGGGTTAATGATTTCCTAAGGCCTTTCTTCAGGATCTTAGCTCGACCTAGTTGTAAACTGAAATTGAGCAAAAGTATCTGTAAACAGGTATTGGAAGAAAAAAATGGGACGCTGGACATGCAGGCTGCATCAACTTTGGGTACATCTGTACGCTCTGCTGTGTTTAAAGAAGATGTTTATGCTGCTATATTGGATGGGAAAGAAATAGATGTTTCTTTTGACAACTTCCCTTACTATTTAAGTGAGAGCACAAAAAATGTCTTGGTGGCTGCTTGCTTTATGCACCTAAGGCATAAAGAACATGAAAAGTTTACTACAGATCTTACAACCATAAACCCTCGTATTCTGCTCTCAGGACCTGCAGGGTCAGAAATATATCAAGAGATGTTGGCAAAGGCACTTGCAAAATACTTTGGAGCTAAGCTGCTCATATTTGATAGTCATTTGCTTTTGGGTGGTTTATCTTCCAAGGAAGCTGAGCTACTCAAAGATGGATTAAATGCTGAAAAATCTTTTAGCAGCAATAAGCAAAGTCCTACAGCAACAAAAATGGCTGGGAGCGTGGATCCACCTGCTATTGAAACAGAGACACCTAGCTCTTCAAATGCACCTTCACTGGCCTTTGACTCTCAACCTAAGTTGGAAACTGATAACATGCCATCCACCTCTGGGACAGCCAAAAGTTGCTTGTTCAAATTAGGTGATAGGGTGAAATTTAGCTGTTCATCTTCTTGTGGAGTATATCAAACATCTTCAAGGGGGCCATCTAATGGAGGTCGGGGGAAGGTTGTCTTACTATTTGATGATAATCCCTTGTCTAAAATTGGTGTGAGATTTGATAAACCCATACCTGATGGAGTTGATCTTGGTGGTGCCTGTGAGGGAGGTCAAGGTTTTTTCTGCAATGTCACTGATCTTCGCTTGGAAAGTAGTGCTGTAGAAGAACTGGACAAATTACTTATTCATTCGCTGTTTGAGGTTGTTTTTAGTGAGAGTAGAAATGCACCATTCATATTGTTCATGAAAGATGCTGAGAAGTCTATTGTAGGAAATGGAGATTCATATGCATTTAAAAGTAAGCTTGAAAATCTTCCAAACAATGTGGTCGTAATAGGTTCTCACACTCAAAATGACAGTCGTAAGGAAAAGTGGAAAGTGGCTACGGGCACAAAAGATGACTTGAAACTAAGGAACAGAACAAGACTGCAGAAGTCAGCATCACATCCTGGTGGTTTGCTTTTTACAAAATTTGGTAGCAATCAGACTGCCCTTCTTGACCTGGCTTTCCCTGATAGTTTTGGACGATTGCATGACAGAGGGAAGGAGGTTCCAAAACCAAATAGAACTTTGACTAAGCTCTTCCCAAATAAAATTATAATTCACATGCCTCAGGACGAGGCACTTCTAGCATCTTGGAAGCAGCAACTGGATCGAGACGTTGAAACTCTCAAAATCAAAGGGAATTTACATCACTTGCGTGCAGTTTTGGGACGATGTGGAATGGAATGTGAAGGACTTGAGACCTTATGCATTAAGGATCAGACACTTACAAATGAAAATGCAGAGAAGATAATTGGTTGGGCTTTAAGTCATCACCTCATGCAGAATTCAGAAGCTAAGCCTGATTCGAAGCTTGTATTGTCATGTGAGAGCATTCAGTATGGAATTGGGATCTTGCAGTCTGTCCAGAATGAGTCCAAGAGCCTGAAGAAATCTCTTAAGGATGTTGTAACAGAAAATGAATTTGAAAAGAGGCTTTTGGCTGACGTTATTCCTCCTAGTGACATTGATGTTACCTTTGATGATATTGGAGCTCTTGAAAAGGTCAAGGATACATTGAAAGAGTTGGTGATGCTTCCTTTACAGCGACCTGAGCTTTTTTGCAAGGGGCAATTAACCAAGCCATGCAAAGGTATCCTATTATTTGGTCCTCCTGGAACGGGTAAAACAATGCTCGCAAAAGCAATTGCTACTGAAGCTGGTGCAAACTTCATTAACATTTCTATGTCAAGTATTACATCTAAGTGGTTTGGTGAGGGTGAGAAATATGTGAAAGCTGTTTTCTCTTTGGCGAGTAAAATTTCTCCAAGTGTTATATTTGTTGATGAGGTTGACAGCATGTTGGGTCGGAGGGAAAACCCAGGGGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTAAATTGGGATGGCTTACGTACGAAGGAAACAGAGAGAGTTCTTGTGCTGGCAGCCACTAACAGGCCGTTTGACCTAGATGAAGCTGTTATAAGGAGAATGCCAAGAAGATTGATGGTAAATTTGCCAGATGCTCCTAATAGAGCAAAAATATTGAAAGTTATACTGGCCAAAGAGGAATTGTCTCCTGATGTTGATTTGGATGCAGTTGCTACTATGACAGATGGATATTCCGGAAGTGATCTTAAGGACCGCGTTGCTGCACTAGCAGAAGGTCAACCAGCTCCAGCGTTATGTAGCAGTGGGGACATCAGATCATTAAACATGGAGGACTTCAAATATGCTCATCAACAGGTTTGTGCAAGTGTTTCTTCTGAATCAGTAAACATGACTGAGCTTTTACAATGGAATGAACTATATGGAGAAGGGGGTTCAAGAGTAAAGAAAGCACTCAGCTATTTCATGTGA 3690 0.4309 MVSTRRSGSLSANNSKRSSSSENKPPSPKRQKVDNGGSSEKPVPTPPENSKDLRTSEPVPDPGECGSADVQIAGAGSADGVSSGKVDATPAVPVTAPIADAACPSFSSWSVYQKQIPNIEGGPWCRFLSQSAQNPNVAVCIPNFTIGSNRSCNFALKDQTISGNLCKIKHTQRDGSVVAVLESTGSKGSVLVNGTHVKKNTSCVLNSGDEVVFGVLGNHSYIFQQLNTEVAIRGAEVPSGVGKYLQLERKSGDPSAVAGASILASLSIKQDLTRWKSPTHTSSKPHLGTDRSSHPIHDSTEIELDASESTPNVHTDKAEDAQTNEKNSTMDCNPDAGAEAGNVKLSGVNDFLRPFFRILARPSCKLKLSKSICKQVLEEKNGTLDMQAASTLGTSVRSAVFKEDVYAAILDGKEIDVSFDNFPYYLSESTKNVLVAACFMHLRHKEHEKFTTDLTTINPRILLSGPAGSEIYQEMLAKALAKYFGAKLLIFDSHLLLGGLSSKEAELLKDGLNAEKSFSSNKQSPTATKMAGSVDPPAIETETPSSSNAPSLAFDSQPKLETDNMPSTSGTAKSCLFKLGDRVKFSCSSSCGVYQTSSRGPSNGGRGKVVLLFDDNPLSKIGVRFDKPIPDGVDLGGACEGGQGFFCNVTDLRLESSAVEELDKLLIHSLFEVVFSESRNAPFILFMKDAEKSIVGNGDSYAFKSKLENLPNNVVVIGSHTQNDSRKEKWKVATGTKDDLKLRNRTRLQKSASHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNRTLTKLFPNKIIIHMPQDEALLASWKQQLDRDVETLKIKGNLHHLRAVLGRCGMECEGLETLCIKDQTLTNENAEKIIGWALSHHLMQNSEAKPDSKLVLSCESIQYGIGILQSVQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIDVTFDDIGALEKVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAIATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKISPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKETERVLVLAATNRPFDLDEAVIRRMPRRLMVNLPDAPNRAKILKVILAKEELSPDVDLDAVATMTDGYSGSDLKDRVAALAEGQPAPALCSSGDIRSLNMEDFKYAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM 1229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00531 1229 MobiDBLite consensus disorder prediction 516 530 - -
Vimu7g00531 1229 SUPERFAMILY SMAD/FHA domain 113 224 IPR008984 GO:0005515
Vimu7g00531 1229 Gene3D - 123 231 - -
Vimu7g00531 1229 MobiDBLite consensus disorder prediction 1 86 - -
Vimu7g00531 1229 Gene3D - 943 1203 IPR027417 -
Vimu7g00531 1229 MobiDBLite consensus disorder prediction 516 570 - -
Vimu7g00531 1229 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 943 1119 - -
Vimu7g00531 1229 MobiDBLite consensus disorder prediction 274 335 - -
Vimu7g00531 1229 Gene3D - 1117 1191 - -
Vimu7g00531 1229 MobiDBLite consensus disorder prediction 290 324 - -
Vimu7g00531 1229 CDD FHA 144 224 - -
Vimu7g00531 1229 Pfam ATPase family associated with various cellular activities (AAA) 985 1114 IPR003959 GO:0005524|GO:0016887
Vimu7g00531 1229 MobiDBLite consensus disorder prediction 539 570 - -
Vimu7g00531 1229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 941 1164 IPR027417 -
Vimu7g00531 1229 MobiDBLite consensus disorder prediction 1 26 - -
Vimu7g00531 1229 ProSitePatterns AAA-protein family signature. 1088 1107 IPR003960 GO:0005524|GO:0016887
Vimu7g00531 1229 CDD RecA-like_ATAD1 948 1114 - -
Vimu7g00531 1229 MobiDBLite consensus disorder prediction 274 289 - -
Vimu7g00531 1229 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 401 1228 - -
Vimu7g00531 1229 SMART AAA_5 981 1118 IPR003593 GO:0016887
Vimu7g00531 1229 Coils Coil 905 925 - -
Vimu7g00531 1229 Pfam FHA domain 145 214 IPR000253 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00531 Vimu-Chr7 5486210 5496871 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00531 944 1193 Calmodulin-binding Proteins AT3G56690 39.453 5.69e-39 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00531 - - gmx:100816731 2103.56