Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00510 AGATTCAGATTCAGATGTCCTAAAGCGCTTCACATGGCCACGACAAGGTCACCTAACCATTCTTCCGAGGAAGGTGCCGATCCCACGCCGTTCCTCGGCGCCTCTTCCGATGACTCTAACTCCGGCCGCCGTCTCCTCCGCCGCCCCAGCCTACGCGAGGCGGCGCGCTTCCTTCGGCAGGCGAGCGGACGCCGACTGATGCGCGAGCCGTCGATGGTGGTGCGGGAGGCGGCGGCGGAGCAATTGGAAGAAAGACAGAGCGATTGGGCGTATTCGAAGCCCGTCGTAGTCTTGGATATTCTTTGGAACTTCGCGTTCGTTGTCGCGGCCGCCACCGTCTTGATTCTTAGTCGCAACGAGAATCCGAATATGCCCCTGCGGTTGTGGATTGTAGGCTACGCTATGCAGTGCGTTCTTCACGTCGCGTGTGTGTGCGTTGAGTACCGGAGGCGCCAGCGCCGCCGTGAACAGTCCAGCGCCGCTGTTGCTGTTGGCGGCAGCGGGGATTTGAGTTCGGCTTCGATGGAAGGCTCTGGACACTACGTGTCGTTGCCGCAGCTCGAGGACGATAGTATAAGTATGGCCAAGCATTTGGAATCAGCCAACACAATGTTTTCATTCATTTGGTGGGTTGTTGGATTCTATTGGATATCAGCTGACAGTGAAGCTCTGGTTCAACATTCTCCTCTGCTTTACTGGTTATGTATAGCCTTCCTGGGTTTTGATGTTTTCTTTGTCGTTTTCTGCATTGCACTAGCATGCATCATTGGTATAGCTGTTTGCTGTTGTCTTCCATGTATCATTGCACTCCTGTATGCAGTTGCAGATCAGGTTGACATTGTTGGCCTTTTAGGATTTCAGGAAGGGGCGTCAAAAGAGGATATTGAGCAATTGTCAAAGTTCAAGTTCCAGAGAACCGAAATTAATGAGAAACTTGCTGGGAATACACAAGGAACTGCTGGAGGAATAATGACTGAATGCGATACTGATTCTCCCATTGAACATGTTCTTTCTGACGAGGATGCGGAATGTTGCATCTGTCTTTCTGCTTATGATGATGGGGTTGAACTTAGGCAACTTCCTTGTGGCCACCATTTTCACTGTTCCTGTGTGGACAAATGGCTGCATATCAATGCTACTTGCCCCCTGTGCAAGTACAATATCTTGAAAAGTACCGGTCATGGTCAAGACGAAGTTTAG 1200 0.5108 RFRFRCPKALHMATTRSPNHSSEEGADPTPFLGASSDDSNSGRRLLRRPSLREAARFLRQASGRRLMREPSMVVREAAAEQLEERQSDWAYSKPVVVLDILWNFAFVVAAATVLILSRNENPNMPLRLWIVGYAMQCVLHVACVCVEYRRRQRRREQSSAAVAVGGSGDLSSASMEGSGHYVSLPQLEDDSISMAKHLESANTMFSFIWWVVGFYWISADSEALVQHSPLLYWLCIAFLGFDVFFVVFCIALACIIGIAVCCCLPCIIALLYAVADQVDIVGLLGFQEGASKEDIEQLSKFKFQRTEINEKLAGNTQGTAGGIMTECDTDSPIEHVLSDEDAECCICLSAYDDGVELRQLPCGHHFHCSCVDKWLHINATCPLCKYNILKSTGHGQDEV 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00510 399 SUPERFAMILY RING/U-box 335 392 - -
Vimu7g00510 399 MobiDBLite consensus disorder prediction 13 45 - -
Vimu7g00510 399 FunFam E3 ubiquitin-protein ligase At1g12760 330 395 - -
Vimu7g00510 399 CDD RING-H2_RNF6-like 343 385 - -
Vimu7g00510 399 PANTHER TARGET OF ERK KINASE MPK-1 62 389 - -
Vimu7g00510 399 Pfam Ring finger domain 343 385 IPR001841 -
Vimu7g00510 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 331 397 IPR013083 -
Vimu7g00510 399 ProSiteProfiles Zinc finger RING-type profile. 344 385 IPR001841 -
Vimu7g00510 399 SMART ring_2 344 384 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00510 Vimu-Chr7 5334722 5337863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00510 12 392 C3H Transcription Factor Family AT1G68070 46.615 2.89e-113 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00510 - - gmx:100779757 679.863