Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00508 TTGCAACAGTATACTGAAACCCTTGTTTGTTGGTGGGCAAGCATGTCATCGTCTTCCTCAAGCCACACCTATGATGTGCCATGGGTAGAGAAGTATCGTCCCAACAAGGTTGCTGACATAGTCGGCAACGAGGACGCAGTCTCCAGGCTGCAAGTCATTGCTCGCGATGGCAACATGCCCAATCTCATCTTATCAGGTCCTCCTGGGACAGGAAAAACCACTAGCATACTAGCCCTCGCTCACGAACTTCTCGGACCAAATTGCAAGGAAGGTGTTCTTGAACTTAATGCATCGGATGATAGAGGAATTGATGTTGTGAGGAACAAGATCAAGATGTTTGCTCAGAAGAAAGTTACCCTTCCCCCTGGGAGGCACAAGATAGTAATACTGGATGAAGCTGATAGCATGACTACAGGAGCACAACAAGCATTGAGAAGGACAATGGAGATATATTCTAACTCTACTCGTTTTGCTCTTGCCTGCAATACTTCGGCCAAGATTATTGAGCCCATTCAGAGTAGATGTGCCATAGTGCGGTTTTCACGGTTGTCTGATCAAGAGATACTTGGTCGACTCATGATTGTAGTTCAAGCCGAGAAGGTTCCCTACGTTCCTGAAGGACTTGAAGCCATCATTTTCACTGCCGATGGTGATATGAGGCAGGCATTGAATAACTTGCAAGCAACATACAGTGGGTTCCAATTTGTTAACCAAGCAAATGTTTTTAAGGTTTGTGACCAGCCACATCCACTGCATGTGAAGAATATGGTGCGTAATGTGATTGAAGGGAACTTTGATGATGCTTGTTCGGGCCTCAAGCAACTATATGATTTAGGATATTCTCCCACTGATATCATCACGACCCTTTTTCGTATCATAAAAAACTATGATATGGCCGAGTATCTGAAATTGGAATTCATGAAGGAAACTGGGTTTGCTCATATGAGAATTTGTGATGGTGTTGGATCTTATCTTCAATTGTGTGGTTTATTAGCTAAGCTTTCCCTAGTTCGAGAGACGGCTAAAGCTGTCTGA 1035 0.4406 MQQYTETLVCWWASMSSSSSSHTYDVPWVEKYRPNKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNCKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTTGAQQALRRTMEIYSNSTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQANVFKVCDQPHPLHVKNMVRNVIEGNFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSLVRETAKAV 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00508 344 Gene3D - 19 183 IPR027417 -
Vimu7g00508 344 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 245 IPR027417 -
Vimu7g00508 344 CDD HLD_clamp_RFC 183 245 - -
Vimu7g00508 344 FunFam Replication factor C subunit 4 184 247 - -
Vimu7g00508 344 Pfam Replication factor C C-terminal domain 248 333 IPR013748 -
Vimu7g00508 344 FunFam Replication factor C subunit 4 20 183 - -
Vimu7g00508 344 Pfam ATPase family associated with various cellular activities (AAA) 62 180 IPR003959 GO:0005524|GO:0016887
Vimu7g00508 344 SUPERFAMILY post-AAA+ oligomerization domain-like 247 338 IPR008921 GO:0003677|GO:0006260
Vimu7g00508 344 SMART AAA_5 58 184 IPR003593 GO:0016887
Vimu7g00508 344 FunFam replication factor C subunit 2 248 340 - -
Vimu7g00508 344 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 27 328 - -
Vimu7g00508 344 Gene3D - 248 340 - -
Vimu7g00508 344 CDD AAA 41 178 - -
Vimu7g00508 344 Gene3D - 184 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00508 Vimu-Chr7 5325282 5327986 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00508 24 343 Core DNA Replication Machinery Family AT1G63160 92.188 0.0 621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00508 K10755 - gmx:100781364 632.484