Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00506 ATGGGCAAGGCGTCAAAGTGGTTTCGCGGGCTTCTCGGTCTCAAAAAAACAGAGCATAGCTCCTCACCCGCCAAGCCACCCAAAGAGAAACGCCGATGGAGCTTCGTTAAATCAAACACAGAAAAGGACAACAACGCTGCTGCCACCTGTCCACCACAAGGAAACGACGGCGGTAAGCACGCCATGGCAGTCGCAGCAGCCACTGCTGCGGTGGCGGAAGCGGCCGTGGCTGCCGCCGAAGCTGCCGCCGTTGTGGTCAGACTAACGAGCAGCAGTGGCAGATGCGCCGACGCGGGACCCACAAGGATTCGCCAACACTGGGCCGCCGTTAAGATCCAAGCCGCTTTTCGAGGCTGTTTGGCAAGGAGAGCACTGAGAGCATTAAAAGGGTTGGTAAAACTTCAAGCATTAGTGAGAGGTCACATTGAGAGGAAGCGTACAGCGCAGTGGCTTAAAAGAGTGCAAGCACTCTTGCATACACAGGCACAAGTCTCTGCAGGGTTGGCTCTGCATGCCTCACCTTCAAGTGCAAAGTTATCTAGCCACTTCCATGGTCCGGAAACACCAGAAAAATTTGAAAGCCCCATCAGCTCTAAGAGCATGAAATATGAGCAATCACCTATATTCAAGAGAAATGGCTCCAAATCCTGTGTGCAGATCAATGGGTATCAAGAGATAAGTGGTAGTAGATTGGAGAATCAAGTAACCGAACAACCATGGAGCTCGGGAAGATCATTGATAAGAACATATAGTTCCAATGATGAAAGAAATGACAGGGTTCTTGAAGTTGATTCTGGAAAACCACACTTTACAAAGCGTAGAAACCTCTCTTACTCCACAGTTTCTGATCATTATAGCAAGAGTTTGAACAGCACAAAGGAGTCAACATCTCTTCAATCTGGTCAAAGTCCATGTGGTGAAGTTCAGTCCTATAGTTACAGCTCACAAAAAGTGAACGAGATTGAGGAGAGTCCATTCTGCACTGCTGACAACAGTCCACAATTCTTATCAGCCACTTCCAAAGATGATGGCTTTAAAAGAAGCCCTTTTACTCCCACAAGGAGTGATGGCTCTAGAAGCTACATTCGTGGTTATGCTGACTACCCAAGTTACATGGCATGCACTGAGTCTTCAAAAGCAAAGGTCAGATCTTTGAGTGCCCCAAAACAAAGGCCAAATTGTGAGAGACCTGGTTCATCAAATAGATACTCTCTTAATGGATTTGACATGTCAAGATTGGCCACACAAAGGGCAATGCATGCAAGCTTCACCAACAAGGCATATCCAGGTTCTGGTCGTTTGGACAAGCTTGGTATGCCTGTGGGGTACAGATACTGA 1338 0.4776 MGKASKWFRGLLGLKKTEHSSSPAKPPKEKRRWSFVKSNTEKDNNAAATCPPQGNDGGKHAMAVAAATAAVAEAAVAAAEAAAVVVRLTSSSGRCADAGPTRIRQHWAAVKIQAAFRGCLARRALRALKGLVKLQALVRGHIERKRTAQWLKRVQALLHTQAQVSAGLALHASPSSAKLSSHFHGPETPEKFESPISSKSMKYEQSPIFKRNGSKSCVQINGYQEISGSRLENQVTEQPWSSGRSLIRTYSSNDERNDRVLEVDSGKPHFTKRRNLSYSTVSDHYSKSLNSTKESTSLQSGQSPCGEVQSYSYSSQKVNEIEESPFCTADNSPQFLSATSKDDGFKRSPFTPTRSDGSRSYIRGYADYPSYMACTESSKAKVRSLSAPKQRPNCERPGSSNRYSLNGFDMSRLATQRAMHASFTNKAYPGSGRLDKLGMPVGYRY 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00506 445 Gene3D - 103 157 - -
Vimu7g00506 445 Pfam IQ calmodulin-binding motif 106 126 IPR000048 GO:0005515
Vimu7g00506 445 Pfam IQ calmodulin-binding motif 132 146 IPR000048 GO:0005515
Vimu7g00506 445 SMART iq_5 127 148 IPR000048 GO:0005515
Vimu7g00506 445 SMART iq_5 104 126 IPR000048 GO:0005515
Vimu7g00506 445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 153 IPR027417 -
Vimu7g00506 445 PANTHER IQ-DOMAIN 5-RELATED 1 406 - -
Vimu7g00506 445 MobiDBLite consensus disorder prediction 1 32 - -
Vimu7g00506 445 Pfam Protein of unknown function (DUF4005) 332 406 IPR025064 -
Vimu7g00506 445 ProSiteProfiles IQ motif profile. 105 133 IPR000048 GO:0005515
Vimu7g00506 445 ProSiteProfiles IQ motif profile. 129 156 IPR000048 GO:0005515
Vimu7g00506 445 MobiDBLite consensus disorder prediction 287 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00506 Vimu-Chr7 5319423 5322245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00506 1 445 IQD Protein Family AT4G23060 41.825 1.01e-73 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00506 - - gmx:100793587 716.457