Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00489 ATGTTACTTATATTCAACACCACTGATAACATAGTCCACTCACATCCTCTCATTTATCAGTCAGTCAATTTCACAACTCAACCACCACTAAACCCCACTGCAAACATTTCTCCACAGATGAACGTTAATTCCACACAATCATTACTCCACTCCAACAACGCTTCCTACTTTTCCTCCTCCCCGGAAACAACCTCCTCTCCCAACGCCCTTCACTCCGACGACGAACTACATGCATTAGCGTCGGCGTGCCCCAAGAGACGTGCAGGCCGCCGAATCTTTAAGGAGACACGACACCCCGTCTACCGGGGGGTGCGACAGAGGAAGAACAACAAGTGGGTCTGCGAGGTGCGTGTCCCCAATGACAAATCCACAAGGATTTGGCTCGGAACGTACCCAACCCCTGAGATGGCCGCACGCGCGCACGACGTTGCCGCCCTCGCGCTCCGAGGAAAGTCCGCTTGTCTCAACTTCGCCGACTCGGCTTGGCGGCTTCCCTTGCCGGCGTCTACAAATGCGAAGGAGATACGGCGAGTGGCGGCGGAGGCTGTTGTTGCGATTGCTGCAGAAGACAGTTGCGTCGAACAATCAGAAAACGAGAATGTTAATGCCGTGGTTGACTGCAAAGTTAGCAGCTGTGGTGTCTGCACTGATGAAGATGGCAATAGTAGCAAAGTGCTGCGGGAGTTTGGTGATTTGGATGAGATAACAGTACCGGTTACATTAGGATTTGAAGACATGCATGAGTGGCTTCAGAACTTGGCGGATGAGCCTCTGCGATCTCCTTCTTTTTTAACATATGTTAGGGACTGGACATGCCTTGAGGATGATGTTGAAGTTTCTTTGTGGAGCTTCTCCTTCTGA 861 0.5122 MLLIFNTTDNIVHSHPLIYQSVNFTTQPPLNPTANISPQMNVNSTQSLLHSNNASYFSSSPETTSSPNALHSDDELHALASACPKRRAGRRIFKETRHPVYRGVRQRKNNKWVCEVRVPNDKSTRIWLGTYPTPEMAARAHDVAALALRGKSACLNFADSAWRLPLPASTNAKEIRRVAAEAVVAIAAEDSCVEQSENENVNAVVDCKVSSCGVCTDEDGNSSKVLREFGDLDEITVPVTLGFEDMHEWLQNLADEPLRSPSFLTYVRDWTCLEDDVEVSLWSFSF 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00489 286 FunFam Ethylene-responsive transcription factor 2 99 159 - -
Vimu7g00489 286 SMART rav1_2 100 164 IPR001471 GO:0003700|GO:0006355
Vimu7g00489 286 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 55 283 IPR045277 GO:0003700
Vimu7g00489 286 Gene3D AP2/ERF domain 100 159 IPR036955 GO:0003700|GO:0006355
Vimu7g00489 286 ProSiteProfiles AP2/ERF domain profile. 100 158 IPR001471 GO:0003700|GO:0006355
Vimu7g00489 286 PRINTS Ethylene responsive element binding protein signature 124 140 IPR001471 GO:0003700|GO:0006355
Vimu7g00489 286 PRINTS Ethylene responsive element binding protein signature 101 112 IPR001471 GO:0003700|GO:0006355
Vimu7g00489 286 CDD AP2 101 160 IPR001471 GO:0003700|GO:0006355
Vimu7g00489 286 Pfam AP2 domain 99 150 IPR001471 GO:0003700|GO:0006355
Vimu7g00489 286 SUPERFAMILY DNA-binding domain 100 160 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00489 Vimu-Chr7 5161061 5161921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00489 79 189 AP2-EREBP Transcription Factor Family AT5G51990 72.973 1.54e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu7g00489 AP2 1.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00489 - - pvu:PHAVU_003G212800g 401.749