LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu7g00487	ATGGCTTTCGCTGCTGCCAAACCTTTCTCTAATAATTCTCTAATACACACTACCAAACATCCCCCAAAACGTTCCCTTTTGCTCAAGGACTACCTCAGGGACGACCTCAGTTCCTGTTCATCCAACGGTTTTAAATCGTTGCCGCGCCGACAATGCTGCACCACCGTCGGATTCTTCGTTCACAAAGATCTCCAACTCCAACGCAAAACAAGGAACACACTCCCTCGACGTCGACGATCATCCGTGTCGGCTCTGCAGAGAGCTTCCGTGGCCGTAATCAACGCGATAAAGTCGCTTCCGATGTCACAGAAAGGTGGTAGAGCGAAGACAGGAGGCGTTCTCTGTAGAAGCCTCTCCAGGAAGCTGTTGAGTAGAAGCTTCTGGAGAAAAGCAGCAGTGGTGAGAGAAGATAGAAGCCAAGGCGTGCCGCGGAGGAGGACATCTTTCCGCGAACTCATTATGCTGGATCAGGAACATCAAAAAGCGACGTCGTTCAATGAGTATACTGCATTAGCTGCCCCGAGTTTCACCACTTCTTCTGGTTGTGGCAGTAACAGTTGGGGAGAGAGTGAATTCACTTTTGCATCTACTGCTGCTTCCTCTGAGAGCTCCAACGAAAACTACCTCCTGCTTGAGACAACCAAAGACTACACACCACGACGTCACAAGGTAGAAGAAGAAGGGGTAACCAAGGAATACTGGGCAAATGAGAAAGAACAGTTTAGTCCTGTATCGATACTGGATTGTCCATTTGTAGATGAAGAAGAGATTTACAAGTCTCGTTTCAGATCCATTTCCTCTGTTGTTTCCATCACGGAAGGAAGGAAACAGAAGCTTATGCACAAAAGATACCATTTTGAAAGTGTGGCTTCACTGGAGCCGGTGGTTTTGGAGAAAAGGTTGGCGCGGTTAGAGCTGGGGGATGAAACATTAAATCATTCTACAAAACAATGTTCCCGCGTAGTAGTGCCAGCAGCGCGTACTCGAAATAACTTGTGTCCTGCAAACAATCACGACATTGAGGAGAACGCTCGAAATCTTCTCAACTTCGTTAAAGGATCAAATCCACGAAACACTTTGATACTTAAGGCAGAGAAGCTGCTGTTTGATTACTTCAAGAAGAGTATCGGAGAATGTAAAGACATTGATCTGTCAAAAAAGCTTCACCTTTGCAAGGTAGCAGAGGATTGGATAAACGGGCGACCCCAAGAACTGTATTTGGATTGGGAAGAACAAGGACGAAGGTCGGTGTATGTTAAGGAGATGGAGAGATGTGAAGGGTGGAAAAAGTATGATGAAGAAATACAAGAATTGGGTGGGGAGCTGGCAAACGAAGTCTTGGCAATTCTGGTTAATGAGTCAGTGCTTGATCTTCTATGA	1380	0.4623	MAFAAAKPFSNNSLIHTTKHPPKRSLLLKDYLRDDLSSCSSNGFKSLPRRQCCTTVGFFVHKDLQLQRKTRNTLPRRRRSSVSALQRASVAVINAIKSLPMSQKGGRAKTGGVLCRSLSRKLLSRSFWRKAAVVREDRSQGVPRRRTSFRELIMLDQEHQKATSFNEYTALAAPSFTTSSGCGSNSWGESEFTFASTAASSESSNENYLLLETTKDYTPRRHKVEEEGVTKEYWANEKEQFSPVSILDCPFVDEEEIYKSRFRSISSVVSITEGRKQKLMHKRYHFESVASLEPVVLEKRLARLELGDETLNHSTKQCSRVVVPAARTRNNLCPANNHDIEENARNLLNFVKGSNPRNTLILKAEKLLFDYFKKSIGECKDIDLSKKLHLCKVAEDWINGRPQELYLDWEEQGRRSVYVKEMERCEGWKKYDEEIQELGGELANEVLAILVNESVLDLL	459

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu7g00487	459	PANTHER	OS04G0572500 PROTEIN	16	458	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu7g00487	Vimu-Chr7	5151693	5154648	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu7g00487	15	458	TRM (TON1 Recruiting Motif) Superfamily	AT4G23020	26.877	2.28e-27	112

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu7g00487	-		-	var:108329219	768.074

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu7g00487	7	5151693	5154648	Vimu7g00487	7	5151693	5154648	ECH

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