Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00487 ATGGCTTTCGCTGCTGCCAAACCTTTCTCTAATAATTCTCTAATACACACTACCAAACATCCCCCAAAACGTTCCCTTTTGCTCAAGGACTACCTCAGGGACGACCTCAGTTCCTGTTCATCCAACGGTTTTAAATCGTTGCCGCGCCGACAATGCTGCACCACCGTCGGATTCTTCGTTCACAAAGATCTCCAACTCCAACGCAAAACAAGGAACACACTCCCTCGACGTCGACGATCATCCGTGTCGGCTCTGCAGAGAGCTTCCGTGGCCGTAATCAACGCGATAAAGTCGCTTCCGATGTCACAGAAAGGTGGTAGAGCGAAGACAGGAGGCGTTCTCTGTAGAAGCCTCTCCAGGAAGCTGTTGAGTAGAAGCTTCTGGAGAAAAGCAGCAGTGGTGAGAGAAGATAGAAGCCAAGGCGTGCCGCGGAGGAGGACATCTTTCCGCGAACTCATTATGCTGGATCAGGAACATCAAAAAGCGACGTCGTTCAATGAGTATACTGCATTAGCTGCCCCGAGTTTCACCACTTCTTCTGGTTGTGGCAGTAACAGTTGGGGAGAGAGTGAATTCACTTTTGCATCTACTGCTGCTTCCTCTGAGAGCTCCAACGAAAACTACCTCCTGCTTGAGACAACCAAAGACTACACACCACGACGTCACAAGGTAGAAGAAGAAGGGGTAACCAAGGAATACTGGGCAAATGAGAAAGAACAGTTTAGTCCTGTATCGATACTGGATTGTCCATTTGTAGATGAAGAAGAGATTTACAAGTCTCGTTTCAGATCCATTTCCTCTGTTGTTTCCATCACGGAAGGAAGGAAACAGAAGCTTATGCACAAAAGATACCATTTTGAAAGTGTGGCTTCACTGGAGCCGGTGGTTTTGGAGAAAAGGTTGGCGCGGTTAGAGCTGGGGGATGAAACATTAAATCATTCTACAAAACAATGTTCCCGCGTAGTAGTGCCAGCAGCGCGTACTCGAAATAACTTGTGTCCTGCAAACAATCACGACATTGAGGAGAACGCTCGAAATCTTCTCAACTTCGTTAAAGGATCAAATCCACGAAACACTTTGATACTTAAGGCAGAGAAGCTGCTGTTTGATTACTTCAAGAAGAGTATCGGAGAATGTAAAGACATTGATCTGTCAAAAAAGCTTCACCTTTGCAAGGTAGCAGAGGATTGGATAAACGGGCGACCCCAAGAACTGTATTTGGATTGGGAAGAACAAGGACGAAGGTCGGTGTATGTTAAGGAGATGGAGAGATGTGAAGGGTGGAAAAAGTATGATGAAGAAATACAAGAATTGGGTGGGGAGCTGGCAAACGAAGTCTTGGCAATTCTGGTTAATGAGTCAGTGCTTGATCTTCTATGA 1380 0.4623 MAFAAAKPFSNNSLIHTTKHPPKRSLLLKDYLRDDLSSCSSNGFKSLPRRQCCTTVGFFVHKDLQLQRKTRNTLPRRRRSSVSALQRASVAVINAIKSLPMSQKGGRAKTGGVLCRSLSRKLLSRSFWRKAAVVREDRSQGVPRRRTSFRELIMLDQEHQKATSFNEYTALAAPSFTTSSGCGSNSWGESEFTFASTAASSESSNENYLLLETTKDYTPRRHKVEEEGVTKEYWANEKEQFSPVSILDCPFVDEEEIYKSRFRSISSVVSITEGRKQKLMHKRYHFESVASLEPVVLEKRLARLELGDETLNHSTKQCSRVVVPAARTRNNLCPANNHDIEENARNLLNFVKGSNPRNTLILKAEKLLFDYFKKSIGECKDIDLSKKLHLCKVAEDWINGRPQELYLDWEEQGRRSVYVKEMERCEGWKKYDEEIQELGGELANEVLAILVNESVLDLL 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00487 459 PANTHER OS04G0572500 PROTEIN 16 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00487 Vimu-Chr7 5151693 5154648 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00487 15 458 TRM (TON1 Recruiting Motif) Superfamily AT4G23020 26.877 2.28e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00487 - - var:108329219 768.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00487 7 5151693 5154648 Vimu7g00487 7 5151693 5154648 ECH