Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00483 ATGGCGTCCAATCAGGAGGAGCAAGACCAAGATGGAGGAACAACGGACCTCAGCACCAGCGACGTCGACGCAGACAAAGCCTTATCCAAAACCACCAACCTCAATGGACTTCACCAACACTTCCAAGACAAAGCCATAGCCTTCCAAGTCTTGCCGCTCAAAAACGAGCCAACGGATTCCGACCCTGACCCGGACCTCAACGCGCCCAATCCTCCTCCACCACCGCCGACTATGCACCTTCGGCTCAAATCGCCCAGGCGCTCCTCCACCAAGGACCGCCACACCAAAGTCGAAGGCCGAGGCCGCAGGATCCGAATACCCGCCACCTGCGCCGCCCGGATCTTCCAACTGACCCGAGAGCTGGGCCACAAATCCGACGGCGAAACCGTCAGGTGGCTCCTCGAGCACTCCGAGAAGGCCATCATAGAAGCCACCGGCACAGGCACCGTGCCAGCCATCGCGGTCTCCGTCGGCGGCGCGCTCAAAATCCCAACGACCTCGAGCGCCAACCAAAACAAGGGCGAAGAAGGCGCGTCTAACAAGAAACGGAAACGCCCTTCTAACAGCGAGTTCGTGGACATAAACGATACCGTTTCGCAGACGTCTGGTCTGGCCCCAGTTCAAGTACCTCAAGGACTGGTCCCGGTCTGGGCCGTTAGTAACCCCAGCATGGTGGTCCCCGCCAACACGTTCTGGATGATCCCGCAGGCCGCGACCACCAGGAACCCCTTGGGCGGAGTTACGGGCCCCTCCAGCCACCAGCCTCAGATATGGGCCTTATCTCCCTCCGTGTTCAACGTGGCGGCCAGGCCCATATCGCCTCTCGTGACAACAACGAATATTCCAGAAGCTTGGTCCGTCATGGCGGCCTGCAGTAACGGTTCTAACTCAGCAGCGGTGAGTACGAGCAGTGTGGGGGCTAGGTCGTCTAGCAATTCCAGCATGGCCCCTAGTGTTCCTTCGAGCGCCACCAAGACTCAGACGTTGAGGGATTTTTCCCTTCAAATTTACGACAAGCAAGAGTTGCAGTTCTTGGGCCGCTCTGGCCCAAACGCCAACCCATGA 1065 0.5897 MASNQEEQDQDGGTTDLSTSDVDADKALSKTTNLNGLHQHFQDKAIAFQVLPLKNEPTDSDPDPDLNAPNPPPPPPTMHLRLKSPRRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHSEKAIIEATGTGTVPAIAVSVGGALKIPTTSSANQNKGEEGASNKKRKRPSNSEFVDINDTVSQTSGLAPVQVPQGLVPVWAVSNPSMVVPANTFWMIPQAATTRNPLGGVTGPSSHQPQIWALSPSVFNVAARPISPLVTTTNIPEAWSVMAACSNGSNSAAVSTSSVGARSSSNSSMAPSVPSSATKTQTLRDFSLQIYDKQELQFLGRSGPNANP 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00483 354 MobiDBLite consensus disorder prediction 176 190 - -
Vimu7g00483 354 Pfam TCP family transcription factor 89 184 IPR017887 -
Vimu7g00483 354 ProSiteProfiles TCP domain profile. 90 144 IPR017887 -
Vimu7g00483 354 MobiDBLite consensus disorder prediction 299 326 - -
Vimu7g00483 354 MobiDBLite consensus disorder prediction 64 80 - -
Vimu7g00483 354 MobiDBLite consensus disorder prediction 164 191 - -
Vimu7g00483 354 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 62 340 IPR005333 GO:0003700
Vimu7g00483 354 MobiDBLite consensus disorder prediction 48 101 - -
Vimu7g00483 354 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00483 Vimu-Chr7 5115740 5116804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00483 86 345 TCP Transcription Factor Family AT2G45680 49.488 5.84e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vimu7g00483 TCP 1.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00483 - - gmx:100797827 421.779