Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00480 ATGCAAGAAGCTGGGATGGCAATGAATATGCTCAGCGCAGAAGTCTCCGCCGCCGCCGCCGACCTCCACCACCGTCAACTGAAGGCGGACATAGCCACCCATCCACTTTACGAACAGCTTCTCGCTGCACACGTCTCATGCCTCCGCGTGGCTACACCCATCGACCAGTTGCCACTCATCGACGCTCAGTTATCACACTTCAACAATCTCCTCCGCTCTTACGCCTCACACCATTCTCATTCCCATTCCCATGATCGACAAGAGCTGGACAACTTCATGCTTCAGCAACATGTTCGGGTGCATGCCGTTGAGGCTGTGATGGCCTGCCGTGATATTGAAAGCACCTTGCAAGCTCTGACAGGAATGAGCCTGGGAGAAGGATCGGGTGCAACAATGTCAGATGACGAAGAGGATTTTCAAATGGATGGGTCTTTAGATCAGTCTAGCGCTGAGGGGCACGACATGATGGGATTTGGTCCATTGCTTCCTACAGAATCTGAAAGGTCCCTCATGGAAAGAGTTCGTCAGGAGCTCAAAATTGAGCTCAAGCAGGGTTTCAAGTCAAGAATCGAAGATGTTAGGGAGGAAATATTAAGGAAAAGGAGAGCCGGGAAATTGCCTGGGGACACAACATCAGTGTTAAAGGCATGGTGGCAGCAACACGCTAAATGGCCCTACCCAACTGAAGATGACAAGGCAAAACTTGTGGAAGAGACAGGGTTGCAGCTGAAGCAAATCAATAATTGGTTCATCAACCAAAGGAAACGCAACTGGCACAGCAACTCTCAATCGGTCACCTCTCTCAAGTCCAAGCGCAAGAGGTAG 825 0.5067 MQEAGMAMNMLSAEVSAAAADLHHRQLKADIATHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLSHFNNLLRSYASHHSHSHSHDRQELDNFMLQQHVRVHAVEAVMACRDIESTLQALTGMSLGEGSGATMSDDEEDFQMDGSLDQSSAEGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKAWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00480 274 ProSiteProfiles 'Homeobox' domain profile. 197 260 IPR001356 GO:0003677
Vimu7g00480 274 Gene3D - 196 270 - -
Vimu7g00480 274 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 46 261 - -
Vimu7g00480 274 CDD homeodomain 200 261 IPR001356 GO:0003677
Vimu7g00480 274 SMART KNOX2_2 79 121 IPR005541 GO:0003677|GO:0005634
Vimu7g00480 274 SMART KNOX1_2 25 69 IPR005540 GO:0003677|GO:0005634
Vimu7g00480 274 SMART HOX_1 199 264 IPR001356 GO:0003677
Vimu7g00480 274 ProSiteProfiles ELK domain profile. 177 197 IPR005539 GO:0003677
Vimu7g00480 274 FunFam homeobox protein knotted-1-like 3 isoform X1 198 259 - -
Vimu7g00480 274 SUPERFAMILY Homeodomain-like 199 264 IPR009057 -
Vimu7g00480 274 Pfam Homeobox KN domain 217 256 IPR008422 GO:0003677|GO:0006355
Vimu7g00480 274 Pfam KNOX1 domain 27 67 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00480 Vimu-Chr7 5087514 5095370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00480 1 273 Homeobox Transcription Factor Family AT1G62990 73.038 1.80e-150 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vimu7g00480 KNOX1 8.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00480 - - gmx:100803130 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00480 7 5087514 5095370 Vimu7g00480 7 5087514 5095370 ECH