Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00479 ATGGTGAGGGGGAAAACTCAGATGAAGCGCATCGAAAACGAAACGAGTAGGCAAGTCACCTTCTCCAAGAGAAGGAACGGCTTGCTGAAAAAGGCCTTTGAGCTTTCGGTGCTGTGCGATGCTGAAGTCGCGCTCATCATCTTCTCCACCAGAGGGAGGCTTTACGAGTTCTCCAGTTCAACTTCAAGATGCTCCAGTATAAACAAAACAGTTGAACGCTATCAAAGGAAAATCAAGGACCTTGGTGACAGCCACAAAGGAATCCATGAAAATACACAGATTCTAAAGGACGGTGGTATGAGCATGGCAGAGACGATCGAACACCTAGAAAATTCCAGAAGGAAGCTTTTGGGAGATGAATTGGATACATGCAGTCTTGACGAGTTACGACAGCTAGAGAATCAGCTCGAACGCAGCTTGGAAAAAATTAGGGCAACAAAGGTACTCTTCAATCACACTTTATGA 465 0.4538 MVRGKTQMKRIENETSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGRLYEFSSSTSRCSSINKTVERYQRKIKDLGDSHKGIHENTQILKDGGMSMAETIEHLENSRRKLLGDELDTCSLDELRQLENQLERSLEKIRATKVLFNHTL 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00479 154 Coils Coil 126 149 - -
Vimu7g00479 154 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vimu7g00479 154 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vimu7g00479 154 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vimu7g00479 154 ProSiteProfiles K-box domain profile. 92 154 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu7g00479 154 Pfam K-box region 96 147 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu7g00479 154 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Vimu7g00479 154 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vimu7g00479 154 FunFam Agamous-like MADS-box protein AGL13 13 84 - -
Vimu7g00479 154 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 146 - -
Vimu7g00479 154 SUPERFAMILY SRF-like 3 77 IPR036879 GO:0003677|GO:0046983
Vimu7g00479 154 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vimu7g00479 154 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Vimu7g00479 154 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vimu7g00479 154 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00479 Vimu-Chr7 5055773 5064192 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00479 1 147 MADS-box Gene Family AT4G11880 71.429 5.56e-66 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vimu7g00479 K-box 4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00479 - - vum:124828919 278.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00479 7 5055773 5064192 Vimu7g00479 7 5055773 5064192 ECH