Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00476 AAAACAGCACAACGGTTAACAAACAAAAATTTAGCAATGGCTGTCTCTCTTCAACATCGTAGTTTGTTGTTGATGTTGTTTTCATGGATGTTGATAATGACGGGAAAGCCAGCAACAGTAGCGGGTTTATTTCAGCCCAGTGAGTGGACACAAGCCCATGCCACATTTTATGGTGACGAGAGTGCTTCTGCCACCATGGGAGGAGCGTGTGGATATGGAAATTTGTTCATAAACGGATACGGGACAGACACAGCAGCTCTGAGCTCTACATTGTTCAACGATGGATACGCATGTGGGACTTGTTACCAGATACAGTGTGTCCAATCCAGTGCATGCTTCTCGAATGTGGCTTACACCACAGTGACTGCAACCAATATCTGCCCTCCTAATTGGGCCGAGGCCTCTGACAATGGAGGGTGGTGCAACCCACCTCGTGCACATTTTGACATGTCCAAGCCCGCTTTCATGAAAATTGCACAGTGGAAAGCTGGAATCGTTCCTGTTATGTACCGCAGAGTGGGTTGCGTGAGGAGTGGGGGATTGAGATTCTCTTTCCAGGGAAATGGTTATTGGTTACTGGTGTATGTGATGAATGTGGGAGGAGGAGGAGACATTGCAAACATGTGGGTGAAAGGAAGTGGAACTGGGTGGATCAGCATGAGCCACAATTGGGGAGCTTCTTACCAAGCATTTGCAACATTGAGTGGTCAATCTCTTTCGTTTAAGGCAACCTCTTACACCACCAAAGAGACCATAATAGCTTGGAATGTTGCTCCCACCAACTGGGGCGTAGGATTAACGTATTCCTCCAACGTCAATTTCAGTTAA 828 0.4686 KTAQRLTNKNLAMAVSLQHRSLLLMLFSWMLIMTGKPATVAGLFQPSEWTQAHATFYGDESASATMGGACGYGNLFINGYGTDTAALSSTLFNDGYACGTCYQIQCVQSSACFSNVAYTTVTATNICPPNWAEASDNGGWCNPPRAHFDMSKPAFMKIAQWKAGIVPVMYRRVGCVRSGGLRFSFQGNGYWLLVYVMNVGGGGDIANMWVKGSGTGWISMSHNWGASYQAFATLSGQSLSFKATSYTTKETIIAWNVAPTNWGVGLTYSSNVNFS 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00476 275 Gene3D - 181 275 IPR036749 -
Vimu7g00476 275 PRINTS Expansin signature 138 155 IPR002963 GO:0009664
Vimu7g00476 275 PRINTS Expansin signature 155 168 IPR002963 GO:0009664
Vimu7g00476 275 PRINTS Expansin signature 179 191 IPR002963 GO:0009664
Vimu7g00476 275 PRINTS Expansin signature 226 247 IPR002963 GO:0009664
Vimu7g00476 275 PRINTS Expansin signature 79 93 IPR002963 GO:0009664
Vimu7g00476 275 PRINTS Expansin signature 191 212 IPR002963 GO:0009664
Vimu7g00476 275 PRINTS Expansin signature 119 129 IPR002963 GO:0009664
Vimu7g00476 275 Pfam Expansin C-terminal domain 182 259 IPR007117 -
Vimu7g00476 275 SMART dpbb_1 84 170 IPR007112 -
Vimu7g00476 275 PRINTS Expansin/Lol pI family signature 163 179 IPR007118 GO:0005576
Vimu7g00476 275 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Vimu7g00476 275 PRINTS Expansin/Lol pI family signature 217 231 IPR007118 GO:0005576
Vimu7g00476 275 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Vimu7g00476 275 PRINTS Expansin/Lol pI family signature 256 270 IPR007118 GO:0005576
Vimu7g00476 275 PRINTS Expansin/Lol pI family signature 48 63 IPR007118 GO:0005576
Vimu7g00476 275 CDD DPBB_EXPA_N 48 175 - -
Vimu7g00476 275 Pfam Lytic transglycolase 84 170 IPR009009 -
Vimu7g00476 275 SUPERFAMILY Barwin-like endoglucanases 48 198 IPR036908 -
Vimu7g00476 275 SUPERFAMILY PHL pollen allergen 177 270 IPR036749 -
Vimu7g00476 275 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 67 180 IPR007112 -
Vimu7g00476 275 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 190 270 IPR007117 -
Vimu7g00476 275 Gene3D - 36 175 IPR036908 -
Vimu7g00476 275 PANTHER EXPANSIN-A15 28 270 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00476 Vimu-Chr7 5035898 5036886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00476 40 274 Expansin Gene Family AT1G12560 70.213 4.15e-123 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00476 - - gmx:100781459 495.738