Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00470 ATGAATTGTTTCGTTTTCATTCTTCTCACTTTTGTGTTGAGCTTCCATAATCATTTTGCTAGAAGCAGTTCAAAAACATATATTGTTCATGTGAAGGGGCCGCAGGATAGGATACTTGCTGAATTAGATGATTTAGAGAGCTGGTATCATTCATTTTTGCCACCTACTATTATGAGCTCCGAGGAACAACCACGAATAATTTATTCATATCGGCACGTGATAAGTGGTTTTTCTGCAAGACTGACGGAACAAGAGCTGAGAGAAGTGGAAAAGAAGGATGGCTTTATCTATGCTCGCCCCGAAATGATGCTACATCCTCAAACCACACATACCCCACAAGTTTTGGGGTTGCAGCAGCAGACGGGACTGTGGAAGGAATCGAACTTTGGAAAGGGAGTAATTGTTGGGGTGCTGGATACTGGAATCATGCCTGACCATCCTTCATTCAGTGATGCAGGAATGCCACCACCGCCACCCAGATGGAGAGGAAGATGTGAATTCCAGGCAACAACTTGTAACAATAAACTAATTGGAGCAAGGTATTTCGTCCGAGCAGTGAATGCAAGGAAAGGAGCAGATGCAATAATTGATGAAGATGGACATGGGACTCACACAGCGAGCACAGCAGCTGGTGCTTTCGTTGATAATGCAGAAGTACTAGGAAATGCCAAAGGCACAGCAGCAGGGATTGCCCCTCATGCTCACCTGGCAATATACAAAGTATGTTTGGGAGAAGAGTGCCCAGAAGGCAGTGTATTGGCCGCATTGGATGCAGCTGTGGAGGATGGCGTGGATGTAATATCAATATCCCTTGGCCTAGGTCGGTCACATCCCTTTTTTTATGATACCATTGCAATAGGCACATTTGCAGCAATGCAGAAGGGAATCTTTGTAAGTTGTTCAGCAGGGAACTCTGGCCCTTTCCCTGGCTCCTTGGTGAATGGAGCCCCTTGGATCCTCTCAGTTGGAGCAAGCAATATTGACAGAAGCATTGTAGCAACAGCAAAGCTAGGAAACGGGCAAGAATTTGACGGCGAATCTCTTTTCCAGCCTTCCAATTATACTCCAACACTACTACCCTTAGCATATGCTGGTAATAATGGCAAACCTGAAGCTGCATTTTGTGCCAGGGGATCCCTGAACTATATTGATTTCAGCGGCAAGGTTGTTTTGTGTGAGAGAGGAGGGGGTACAGGAAGAACTTCCAAAGGGGAGGAAGTAAAGAGAGTTGGTGGTGCAGCCATGATTATCATGAATGATGAAAGCAATGGCTACAGTCTCTCAGCTGATGTACATGTTCTACCTGCAACACATGTAAGTTATGATGCTGGACTTAAGATTATAGCCTACATAAATTCAACTGAAACACCTACAGCTACCATCTTATTCAAGGGAACTGTAATAGGAAACTCCCTATCTCCGGCCGTTTCATCCTTCTCCTCAAGAGGTCCCAACTTGCCCAGTCCTGGTATTTTGAAACCAGACATCATAGGACCAGGCGTCAACATCCTAGCTGCCTGGCCATTCCCCCTTAACAACCATACTGATTCAAAATCCACTTTCAACATCCTTTCTGGCACATCAATGTCATGCCCACATCTTAGTGGCGTAGCCGCTTTGCTCAAAAGCTCTCATCCTGACTGGTCACCAGCTGCCATAAAATCTGCCATAATGACTTCAGCAGACATAATCAATTCTGAACAGAAACTCATTGTTGACGAAACACTTCAACCTGCCGATATCTTTGCCACAGGTTCTGGCCACGTGAATCCATCTAGAGCAAATGACCCCGGGCTAGTTTATGATATCACGCCAGATGATTATATACCTTATCTCTGTGGTTTAGGCTACGGAGATACGGAGGTTGGTATCATTGCACATAAAACGATTATGTGCTCTGGGATTTCGAGCATTCCCGAAGGAGAGCTCAACTATCCCTCATTTTCTGTGGTGCTTGGTTCCCCACAAACATTCACAAGGACTGTAACAAATGTAGGTGCGGCCAACTCGTCTTATGTTGTCCAGGTTACAGCGCCAGAAGGGGTCAATGTGAAGGTCCAGCCAGATATACTGAACTTTTCAGAAGCAAACCAGAAAGAGGCATATTCAGTGTCATTCAGCCGTATAGAGTCGGGCAATGAAACTGCGGAATATGCTCAAGGGTTTTTACAATGGGTCTCTGTCAAACACACTGTAAGGAGTCCGATCTTAGTCATCTTTGTGTAA 2226 0.4519 MNCFVFILLTFVLSFHNHFARSSSKTYIVHVKGPQDRILAELDDLESWYHSFLPPTIMSSEEQPRIIYSYRHVISGFSARLTEQELREVEKKDGFIYARPEMMLHPQTTHTPQVLGLQQQTGLWKESNFGKGVIVGVLDTGIMPDHPSFSDAGMPPPPPRWRGRCEFQATTCNNKLIGARYFVRAVNARKGADAIIDEDGHGTHTASTAAGAFVDNAEVLGNAKGTAAGIAPHAHLAIYKVCLGEECPEGSVLAALDAAVEDGVDVISISLGLGRSHPFFYDTIAIGTFAAMQKGIFVSCSAGNSGPFPGSLVNGAPWILSVGASNIDRSIVATAKLGNGQEFDGESLFQPSNYTPTLLPLAYAGNNGKPEAAFCARGSLNYIDFSGKVVLCERGGGTGRTSKGEEVKRVGGAAMIIMNDESNGYSLSADVHVLPATHVSYDAGLKIIAYINSTETPTATILFKGTVIGNSLSPAVSSFSSRGPNLPSPGILKPDIIGPGVNILAAWPFPLNNHTDSKSTFNILSGTSMSCPHLSGVAALLKSSHPDWSPAAIKSAIMTSADIINSEQKLIVDETLQPADIFATGSGHVNPSRANDPGLVYDITPDDYIPYLCGLGYGDTEVGIIAHKTIMCSGISSIPEGELNYPSFSVVLGSPQTFTRTVTNVGAANSSYVVQVTAPEGVNVKVQPDILNFSEANQKEAYSVSFSRIESGNETAEYAQGFLQWVSVKHTVRSPILVIFV 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00470 741 Gene3D Peptidase S8/S53 domain 132 608 IPR036852 GO:0004252|GO:0006508
Vimu7g00470 741 FunFam subtilisin-like protease SBT1.5 328 468 - -
Vimu7g00470 741 Gene3D - 612 740 - -
Vimu7g00470 741 Pfam Subtilase family 130 565 IPR000209 GO:0006508|GO:0008236
Vimu7g00470 741 FunFam Subtilisin-like protease SBT1.5 132 394 - -
Vimu7g00470 741 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 135 146 IPR023827 -
Vimu7g00470 741 Pfam Fibronectin type-III domain 642 738 IPR041469 -
Vimu7g00470 741 Pfam Peptidase inhibitor I9 26 101 IPR010259 -
Vimu7g00470 741 SUPERFAMILY Subtilisin-like 107 599 IPR036852 GO:0004252|GO:0006508
Vimu7g00470 741 CDD PA_subtilisin_like 334 461 - -
Vimu7g00470 741 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 13 105 IPR037045 -
Vimu7g00470 741 SUPERFAMILY PA domain 353 453 IPR046450 -
Vimu7g00470 741 Pfam PA domain 371 447 IPR003137 -
Vimu7g00470 741 PRINTS Subtilisin serine protease family (S8) signature 130 149 IPR015500 -
Vimu7g00470 741 PRINTS Subtilisin serine protease family (S8) signature 197 210 IPR015500 -
Vimu7g00470 741 PRINTS Subtilisin serine protease family (S8) signature 525 541 IPR015500 -
Vimu7g00470 741 Gene3D - 328 469 - -
Vimu7g00470 741 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 27 737 IPR045051 -
Vimu7g00470 741 ProSiteProfiles Serine proteases, subtilase domain profile. 114 595 - -
Vimu7g00470 741 CDD Peptidases_S8_3 104 562 IPR034197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00470 Vimu-Chr7 5010329 5012554 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00470 6 740 Subtilisin-like Serine Gene Family AT1G04110 44.099 0.0 611
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00470 - - gmx:100812208 1228.39