Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00465 ATGGGGAGGCAACCCTGCTGTGACAAACTTGGGGTGAAGAAAGGTCCATGGACTGCGGAGGAAGACAAGAAGCTCATCAACTTCATTTTCACCAATGGCCAGTGTTGTTGGCGTGCTGTGCCAAAGCTTGCTGGCCTTAGGCGTTGTGGCAAGAGTTGTCGCCTTCGTTGGACTAATTATCTTCGCCCAGACTTGAAGAGAGGACTCCTCACACAAGCAGAGGAGCAACTTGTTATTGATCTCCATGCCCGTCTTGGCAACAGGTGGTCCAAAATTGCTGCCAGGTTACCCGGAAGAACAGACAACGAGATTAAAAACCATTGGAACACACATATCAAGAAAAAACTCCTGAAAATGGGTATTGATCCCGTTACTCACGAACCTCTCATTAAACAAGCAGCATCTCAGGATAGTTCACCCTCCCCCTCAGAGCATTTGCCACAGCCTGAGAATAACCTCGATCAGGTGAAAGAAACTGATGGGGTTCTCAACTCAGAGGAGAATTCAAGTTCATCCCAAGCTGAAAATTCTTCTGGGGATGATTCACTTTTGCTAGATAGTATTTGCAGTGACGATTCTCTGTTAAACACCCTGTGGCTGGATGAAACTCCTCTGATGGAAGCATTATGGGACACAACACCCAAACTAGAGAATAATACTAATAGTAACACGGGTTTGGTACCATCTTGGGAGGACAATTGTGCTTGGTTATTGGACTGTCAGGACTTCGGTATTCATGATTTTGGGTTTAACTGTTTCAACGAGATAGAGTCAAATGCACTGCATACCATAGAAATGAAGGACGAGGAGCATTAA 816 0.4547 MGRQPCCDKLGVKKGPWTAEEDKKLINFIFTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTQAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLIKQAASQDSSPSPSEHLPQPENNLDQVKETDGVLNSEENSSSSQAENSSGDDSLLLDSICSDDSLLNTLWLDETPLMEALWDTTPKLENNTNSNTGLVPSWEDNCAWLLDCQDFGIHDFGFNCFNEIESNALHTIEMKDEEH 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00465 271 MobiDBLite consensus disorder prediction 132 152 - -
Vimu7g00465 271 CDD SANT 16 61 IPR001005 -
Vimu7g00465 271 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vimu7g00465 271 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vimu7g00465 271 FunFam MYB transcription factor 11 67 - -
Vimu7g00465 271 MobiDBLite consensus disorder prediction 161 180 - -
Vimu7g00465 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vimu7g00465 271 FunFam MYB transcription factor 70 146 - -
Vimu7g00465 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vimu7g00465 271 Gene3D - 70 144 - -
Vimu7g00465 271 CDD SANT 71 112 IPR001005 -
Vimu7g00465 271 Gene3D - 12 67 - -
Vimu7g00465 271 SMART sant 13 63 IPR001005 -
Vimu7g00465 271 SMART sant 66 114 IPR001005 -
Vimu7g00465 271 PANTHER F14D16.11-RELATED 1 172 - -
Vimu7g00465 271 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Vimu7g00465 271 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vimu7g00465 271 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00465 Vimu-Chr7 4967627 4969207 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00465 1 250 MYB Transcription Factor Family AT4G22680 59.774 5.67e-102 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu7g00465 Myb_DNA-binding 1.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00465 K09422 - gmx:100786965 471.47