Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00430 ATGACAAATCCTGTTACCTTAAGTCTTCCAAATGGCACCAAGAACAAAGTGCATTGGGTGAATAAGGATGGTGATGTTTGGCTTTGCAATGGTTGGAAAGAGTTTGCAAAATACTCCAAGTTGGATGTGTCACATTTTTTAGTGTTTCGATACGAAGGAAATTCTTGCTTTAACGTGATTATTTTTGGAAAAAGTGCTTTAGAAATAGAATACCCATTAAGCAGAGAAGCTGCTAATGAAAAAGTGGAAGAAATTATCGAAGGAGGTGAGTTTTCTGCAAAATTCAGTGAAAAGGGAAGTAAAAGACCAAAAGAAGAACTTCAAGTAAAAGAAGAACAACCTAAGAAACATTCTAAAACTAGAGCATGTTCTGATTATTCCAAGCACATGAATAATGGTAGTGAAAGAGAGAAGAAAGTGAGACTCTTCCAGGAGAAGGTGAAGGAGATGTTCAACTCTAAGAATATTCACTTCACAAGTATTATACGAAAATCATACACTGAGAGAAATCTTCTGATCATACCAGCTGAATTTTCCAAACATTATCTACACAAGGAAGGACTTGCTACACTTTTTGTTGAAGATGGCAGAACATGGGAGGTTGAGACAAAGCTGAATTTCTTTGGACAATTAACATTTTCTAGTGGGTGGAGGAAGTTTTTGTTGGACAATAAATTGAAAGTTGATGATGTTTGTGTTTTTGAGTTATTAGAGAATCCACAATTTTTATTCAAGGTTACTATATATCCTCTACAAGAGGAGGACTCAACCACACCACTCTTCAAAGGCCAAAAAGGAGTTTCTCACTTGCCTTCTTCATCCCTTAAAACTCCTATGACCACTCAAGCAAGGACACCAAAGCCCAATGATGATCTCTTCATCTGCATCAAGTCAGAATTTCCGACAATACCATATGAATATGCGAAGAAGTATGCTAAGGAAGATGGCAGACTTGTGACTTTTCGTGTTGGGGATAAATCTTGGCAAGTAAAGTTTTTGTTTTATGATAAACATCACTTTGGTAGATTCTCTCGTGGGTGGCATGATTTTGCCAGGGATTGCGACTTGAAAATGGGAGATGCTTGTATCTTTAGGATGAAAATTTTGCTCGGCCACGAAGCACGACCAATAGACAATACAGCTCGACCATGA 1152 0.375 MTNPVTLSLPNGTKNKVHWVNKDGDVWLCNGWKEFAKYSKLDVSHFLVFRYEGNSCFNVIIFGKSALEIEYPLSREAANEKVEEIIEGGEFSAKFSEKGSKRPKEELQVKEEQPKKHSKTRACSDYSKHMNNGSEREKKVRLFQEKVKEMFNSKNIHFTSIIRKSYTERNLLIIPAEFSKHYLHKEGLATLFVEDGRTWEVETKLNFFGQLTFSSGWRKFLLDNKLKVDDVCVFELLENPQFLFKVTIYPLQEEDSTTPLFKGQKGVSHLPSSSLKTPMTTQARTPKPNDDLFICIKSEFPTIPYEYAKKYAKEDGRLVTFRVGDKSWQVKFLFYDKHHFGRFSRGWHDFARDCDLKMGDACIFRMKILLGHEARPIDNTARP 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00430 383 SMART B3_2 292 380 IPR003340 GO:0003677
Vimu7g00430 383 SMART B3_2 158 252 IPR003340 GO:0003677
Vimu7g00430 383 ProSiteProfiles B3 DNA-binding domain profile. 1 65 IPR003340 GO:0003677
Vimu7g00430 383 Gene3D - 135 253 IPR015300 -
Vimu7g00430 383 Gene3D - 272 370 IPR015300 -
Vimu7g00430 383 MobiDBLite consensus disorder prediction 96 128 - -
Vimu7g00430 383 PANTHER B3 DOMAIN-CONTAINING 2 125 - -
Vimu7g00430 383 CDD B3_DNA 295 366 IPR003340 GO:0003677
Vimu7g00430 383 ProSiteProfiles B3 DNA-binding domain profile. 303 383 IPR003340 GO:0003677
Vimu7g00430 383 SUPERFAMILY DNA-binding pseudobarrel domain 302 366 IPR015300 -
Vimu7g00430 383 Pfam B3 DNA binding domain 302 366 IPR003340 GO:0003677
Vimu7g00430 383 Pfam B3 DNA binding domain 159 248 IPR003340 GO:0003677
Vimu7g00430 383 MobiDBLite consensus disorder prediction 262 284 - -
Vimu7g00430 383 SUPERFAMILY DNA-binding pseudobarrel domain 151 248 IPR015300 -
Vimu7g00430 383 SUPERFAMILY DNA-binding pseudobarrel domain 4 72 IPR015300 -
Vimu7g00430 383 Gene3D - 1 66 IPR015300 -
Vimu7g00430 383 ProSiteProfiles B3 DNA-binding domain profile. 157 250 IPR003340 GO:0003677
Vimu7g00430 383 CDD B3_DNA 157 250 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00430 Vimu-Chr7 4650056 4653531 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00430 1 249 B3 DNA Binding Superfamily AT3G18990 25.243 3.01e-20 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu7g00430 B3 1.7e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00430 - - vra:106753565 719.539