Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00428 ATGAACTCTCTCTTTTCGCTTGAAAACCTTCCTCCACCACCGGGAATTCCAATCCCTGCCTCAATTGCCGCCGCCACAGCCACCACTAGCGCTTCCCCTGTCCCAACTCTAATCCCAAAGCTCGAACCTTACGACCAATGGCTCGACAACCCCAGTTCGCAACAACAACAATCACACGACCCCAATTTTTCAAATGGGTCTCTCGACCTCGACCTCAATCTCGTATGCGACGGAACCTCCCACGAACCACACAACGACTTGTTCTCTGAGTTCAACAGAATCTCCCAGCTTTTCCACACCGCGTTCTCCGACCCCCAGAATGATGCCGTTCCCGACCCCATCACCGATAGCCTGCAGCAGCTCCGAAACGACGCTTTTTCCAACCCTTTTGCCGAAAACTCGCAGCATATCAAAACCGAAGCCGATTCGGACCCATGGCTGCAGCAGGCCCCAAAGGACACCGTTCCGGACCCGGATTCGCGGGCAATTGTGCCCGTTCCGGAAGAGGAGCAGTCTTCTTCGATGGTGGCCGCAACCACTCCGAGGCGGCGGTGTAAGGAGCTGGTTCGGGTGGCGGATCTTGGCGGGCCGGAGCAACGGCACTTCAGGGACGTTGTCCGGCGAACTCGGATGGTGTATGACTCGCTGCGCGTGCTGGCGACGGTGGAGGAAGAGCGGCGGGTGGACGCCCGCAAGGCGCGCAGCGATTTGCGAGCCTCGGCCGTGATGAGGAGCTGTGGTTTGTGGTTGAATCGCGACAAGAGAATTGTTGGTGCGATTCCTGGTGTTTGCGTTGGTGATGTGTTCCTTTATAGGATGGAGTTGTGCGTGGTTGGGTTGCACGGTCAACCTCAGGCCGGCATCGATTATCTTCCTGCCAGCATGAGTTCCAACGGCGAACCAATTGCCACGAGCGTGATTGTCTCTGGTGGTTACGAGGATGATGTTGACGAGGGTGATGTTATCACCTACTCCGGCCATGGTGGGCAGGACAAGAATTCTCGGCAGGTTTTTCACCAGAAGCTCGAGGGAGGGAACCTTGCAATGGAGCGCAGTAAACACTATGGGATTGAGGTTAGGGTGATTCGCGGGGTGCGCTGTGAGGGTGCAGCCTCTGCCACTGGGAAGTTGTACGTGTATGACGGCTTGTATACGATTATCGATTGCTGGTTTGATGTTGGGAAGTCGGGTTTCGGTGTTTTCAAGTTCAAGCTGTGTAGGATCGATGGGCAAGCTAAGATGGGGAGCACGATCATAAAGGAAGCGCATATACTAAAGAAGGATCCTTTGCGTTTCAAACCCATGTGTTGTGTTTCGCTTGATATTTCAAACAGGAACGAGAAAGTGGGGGTTCGCCTTTTCAATGATCTTGATCGCAATTTCGACCCTCTCAGGTATGAATACCTTGTGAAGACAAACTTTCCTGAGTTCGTTTTTCACCAGAGTGGGAGGGGCACGGGTTGCGATTGTGTGGACGGGTGTGTTGAAGGGTGCTTCTGTGCCATGAAGAACGGAGGGGAGTTTCCCTATAATCACAGTGGGATTCTCTTGAGAGGGAAGCCTTTGGTTTTTGAGTGTGGCCCGTTTTGTCAATGCCCCCCTCATTGTCGGAATCGGGTGACGCAGAAGGGACTCAAGAACAGGATGGAGGTGTTCAGATCTAGGGAAACTGGTTGGGGAGTTAGGTCCTTGGACCTTATTCAAGCTGGTGCTTTTATATGTGAGTACACAGGGGTTGTGCTCACTAGGGAGCAAGCAGAACTTTTGTCCATGAATGGTGATTCCTTGATATATCCGAATCGGTTCACTGATAGGTGGTCGGAATGGGGTGACTTGTCTGTGATAGACTCCAATTATGTGCGTGCATCTTATCCCTCGCTCCCTCCTTTGGATTTTGCTTTGGATGTGTCAAGAATGAGGAATGTTGCTTGCTATATGAGTCATAGTTCCACTCCCAATGTGTTTGTTCAGTTTGTCTTGTATGATCACAATAATTTGATGTTCCCTCACCTTATGCTGTTTGCAATGGAGAACATCCCTCCCATGAGAGAGCTCAGCCTTGATTATGGGGTAGCTGACGAGTGGACAGGAAAACTCGCTATATGTAACTGA 2112 0.5194 MNSLFSLENLPPPPGIPIPASIAAATATTSASPVPTLIPKLEPYDQWLDNPSSQQQQSHDPNFSNGSLDLDLNLVCDGTSHEPHNDLFSEFNRISQLFHTAFSDPQNDAVPDPITDSLQQLRNDAFSNPFAENSQHIKTEADSDPWLQQAPKDTVPDPDSRAIVPVPEEEQSSSMVAATTPRRRCKELVRVADLGGPEQRHFRDVVRRTRMVYDSLRVLATVEEERRVDARKARSDLRASAVMRSCGLWLNRDKRIVGAIPGVCVGDVFLYRMELCVVGLHGQPQAGIDYLPASMSSNGEPIATSVIVSGGYEDDVDEGDVITYSGHGGQDKNSRQVFHQKLEGGNLAMERSKHYGIEVRVIRGVRCEGAASATGKLYVYDGLYTIIDCWFDVGKSGFGVFKFKLCRIDGQAKMGSTIIKEAHILKKDPLRFKPMCCVSLDISNRNEKVGVRLFNDLDRNFDPLRYEYLVKTNFPEFVFHQSGRGTGCDCVDGCVEGCFCAMKNGGEFPYNHSGILLRGKPLVFECGPFCQCPPHCRNRVTQKGLKNRMEVFRSRETGWGVRSLDLIQAGAFICEYTGVVLTREQAELLSMNGDSLIYPNRFTDRWSEWGDLSVIDSNYVRASYPSLPPLDFALDVSRMRNVACYMSHSSTPNVFVQFVLYDHNNLMFPHLMLFAMENIPPMRELSLDYGVADEWTGKLAICN 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00428 703 SUPERFAMILY PUA domain-like 239 420 IPR015947 -
Vimu7g00428 703 ProSiteProfiles YDG domain profile. 258 407 IPR003105 -
Vimu7g00428 703 Pfam Pre-SET motif 442 539 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vimu7g00428 703 MobiDBLite consensus disorder prediction 43 65 - -
Vimu7g00428 703 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 132 691 - -
Vimu7g00428 703 SMART preset_2 439 531 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vimu7g00428 703 Pfam SET domain 558 690 IPR001214 GO:0005515
Vimu7g00428 703 Pfam SAD/SRA domain 257 411 IPR003105 -
Vimu7g00428 703 Gene3D SET domain 417 703 IPR046341 -
Vimu7g00428 703 ProSiteProfiles Pre-SET domain profile. 486 544 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vimu7g00428 703 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 101 703 IPR025794 GO:0016571
Vimu7g00428 703 SMART set_7 547 696 IPR001214 GO:0005515
Vimu7g00428 703 MobiDBLite consensus disorder prediction 47 65 - -
Vimu7g00428 703 Gene3D - 255 416 IPR036987 -
Vimu7g00428 703 ProSiteProfiles SET domain profile. 547 690 IPR001214 GO:0005515
Vimu7g00428 703 SMART G9a_1 253 411 IPR003105 -
Vimu7g00428 703 MobiDBLite consensus disorder prediction 140 179 - -
Vimu7g00428 703 SUPERFAMILY SET domain 431 702 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00428 Vimu-Chr7 4635192 4637303 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00428 203 692 Su(var)3-9 homologs AT5G04940 38.431 4.94e-102 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vimu7g00428 SAD_SRA 4.6e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00428 K11420 - gmx:100795514 1129.39