Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00422 ATGATTAGGCTAAATGGGGAGGATCAAACCTCATGTTCTGCTACAGCAAAGCAAAAGGAAGAAGGGGCCTTCTCGCATAAGACAAGACTTCAACCAGAGAGCTACATTTCAGTCTCTGAGGATGAAAATACGCTTGTGGAATCCAAAAAATCTGATCTACCTGGATATGCGGTTGTAATTACCTCTAAAGGCTCTATTATAGTAGAACTTTATAAGGAAAGTGCCCCTGAAGTTGTTGATGAATTCATAGATTTATGTCAAAAAGGGCACTTCAAGGGAATGCTTTTTCACCAAGTAATTAAACACTATGTAATTCAGGCTGGTCATAACAAAGGGCCCGGAGCTACTGAAGATTGGAACTTGTTAGGAAAGAAATATGCAAGTATGAGACATGAAGCATTCATGCTTGGAACTTCGAAGGGTAATTACTTCAACAAAGGATTTGATCTTTTCATCACAACTGCACCAATACCAGATCTAAGTGAAAAGCTTATTGTGTTTGGCCGAGTCATCAAGGGAGAGGATATTGTTCAGGAAATTGAAGAAGTGGATACAGATGAACATTACCAACCAAAAATTTCTATTGGGATACTTGATGTGGCTCTTAAAGAGATAGTGTGA 621 0.3881 MIRLNGEDQTSCSATAKQKEEGAFSHKTRLQPESYISVSEDENTLVESKKSDLPGYAVVITSKGSIIVELYKESAPEVVDEFIDLCQKGHFKGMLFHQVIKHYVIQAGHNKGPGATEDWNLLGKKYASMRHEAFMLGTSKGNYFNKGFDLFITTAPIPDLSEKLIVFGRVIKGEDIVQEIEEVDTDEHYQPKISIGILDVALKEIV 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00422 206 SUPERFAMILY Cyclophilin-like 53 201 IPR029000 -
Vimu7g00422 206 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-4 25 204 - -
Vimu7g00422 206 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 59 200 IPR002130 GO:0000413|GO:0003755
Vimu7g00422 206 MobiDBLite consensus disorder prediction 1 27 - -
Vimu7g00422 206 MobiDBLite consensus disorder prediction 1 18 - -
Vimu7g00422 206 CDD cyclophilin 61 199 - -
Vimu7g00422 206 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 162 177 IPR002130 GO:0000413|GO:0003755
Vimu7g00422 206 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 96 108 IPR002130 GO:0000413|GO:0003755
Vimu7g00422 206 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 70 85 IPR002130 GO:0000413|GO:0003755
Vimu7g00422 206 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 149 161 IPR002130 GO:0000413|GO:0003755
Vimu7g00422 206 Gene3D - 41 205 IPR029000 -
Vimu7g00422 206 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 64 202 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00422 Vimu-Chr7 4611055 4613615 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00422 34 202 U-box Gene Family AT5G67530 24.432 7.53e-14 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00422 - - gmx:100796043 352.829