Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00421 ATGAAACCCGACTTGTACGAAATATCCGACGACGAATGGGAGAATCACTCCTTCAAACCTTCGCGCGTCCTCAAACGACCTCGCACTTCGTCTCCTCCTTCCCCGCCACCTATCGAGTCCTTCGCTTACACGTCTAAGGTCGACGTTTTAAGCGAAAACGACAGCGATTGCGTCGAAATCGCCCCGAACGACGCCAATTTCCTCGACGACCTCGAGGACGCCGACGTGGACGCTTCCGGTGGCGGTTATGCGGCGGCCTCGCGAGGCCGGAGGTTCATCATCGATGACGAGGACGAAGACGCTGAGGAGAACGGTGGAAGAGACGGACGCGTGGCGGAATTGTACGAGGTGGAAGAAGAAGAAGTTGAAGAGTTGAACGAAAACGATGTCGTTGGTAGGGCTTTGCATAAGTGCGCGCGAATCTCTGCGGAGTTGAAGGGCGAACTCTTCGGCTCGACGGGGACCGCGTGCGAGAGGTATTCGGAGGCGGAGTCTTCGTCAGTGAGGATCGTGACTCAGGAGGATGTGGATGTTGCGTGCGCGTCGGAGGATTCGGATTTTCAGCCATTGCTAAAGCCGTATCAGTTGGTTGGTGTCAACTTTTTGCTTTTGCTGTATCGGAAGGGGATTGGAGGAGCCATATTGGCGGATGAAATGGGTCTCGGCAAAACAGTTCAGGCCATCACATATTTAACTCTGTTGAAACGCTTGCACAATGATTCTGGTCCACATCTTATAGTCTGTCCTGCTTCTGTTTTGGAAAACTGGGAAAGGGAACTAAAAAGATGGTGTCCGTACTTTTCTGTTCTTCAATATCATGGTGCTGGACGTGCAGCATACTGCAAGGAGTTGAACTCTTTGTCCAAGGCAGGATTGCCTCCTCCATTTAATGTTCTTCTTGTGTGTTATTCACTTTACGAGCGTCACAGTGCACAGCAGAAAGATGATCGGAAAATTCTGAAGCGATGGAGATGGAGCTGTGTGTTGATGGATGAGGCACATGCTTTGAAGGACAAAAACAGCTTTAGGTGGAAAAATCTGATGTCTGTTGCACGAAATGCGAACCAACGTTTGATGTTGACTGGGACACCACTTCAAAATGATCTACATGAATTATGGTCATTGTTGGAGTTTATGATGCCTGATATTTTTGCTTCTGAAGACGTTGACCTAAAAAAGTTACTAAATGCAGAAGATAGAGATTTAATTGGTCGGATGAAGTCCATCTTGGGGCCATTTATTTTGCGGCGACTGAAATCTGACGTGATGCAGCAACTTGTTCCAAAAATACAGCAAGTTGAGTATGTTATAATGGAAAGGCAGCAGGAATCTGCTTACAAGGAAGCCATTGAAGAGTATCGTGCAGTTTCACAAGCTCGGATGGCAAAATGTTCTGAGCTTAACTCAAAAAGTTTACTAGCAGTGCTTCCCCGGCGACAGATAAATAACTATTTTGTTCAGTTCCGCAAGATAGCAAATCATCCCTTGTTAATAAGGCGAATCTACAATGATGAGGATGTCATCCGCTTTGCTAGGAAGCTACATCCAATAGGTGCTTTTGGTTTTGAATGTACTTTGGACAGAGTTATAGAGGAACTTAAAAATTACAACGACTTTTCTATTCACCGGCTTTTACTTCACTATGGTGTCAATGATAAAAAGGGGATCCTTTCGGATAAGCATGTTATGCTTTCTGCAAAATGTCGGGCCTTAGCAGAACTTCTTCCTTCACTAAAGAAGGATGGCCATCGAGTCTTGATCTTTAGTCAATGGACCTCAATGCTTGACATATTGGAGTGGAGTTTGGATGTCATTGGATTGACCTATAGACGGCTAGATGGAAGTACACAGGTAGCGGAGAGGCAAACAATAGTTGATACGTTCAATAACGATACTTCAATATTTGCATGCTTACTTTCCACGAGAGCTGGTGGTCAGGGCTTAAACTTAACAGGAGCTGATACAGTTGTAATTCATGACATGGATTTTAACCCACAGATTGATAGGCAAGCTGAAGATCGTTGCCATCGAATTGGTCAAACAAAGCCTGTAACCATATATCGGCTCGTGACCAAGGGAACAGTAGATGAAAATGTGTATGAGATTGCAAAAAGAAAGCTAGTATTAGATGCAGCCGTTCTCGAGTCCATGGAGGAGATTAATGAAGGTGACATGCCCGAGAAGACCATGGGAGAGATATTGTCTGCTATTTTATTGAGTTAA 2223 0.4543 MKPDLYEISDDEWENHSFKPSRVLKRPRTSSPPSPPPIESFAYTSKVDVLSENDSDCVEIAPNDANFLDDLEDADVDASGGGYAAASRGRRFIIDDEDEDAEENGGRDGRVAELYEVEEEEVEELNENDVVGRALHKCARISAELKGELFGSTGTACERYSEAESSSVRIVTQEDVDVACASEDSDFQPLLKPYQLVGVNFLLLLYRKGIGGAILADEMGLGKTVQAITYLTLLKRLHNDSGPHLIVCPASVLENWERELKRWCPYFSVLQYHGAGRAAYCKELNSLSKAGLPPPFNVLLVCYSLYERHSAQQKDDRKILKRWRWSCVLMDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFASEDVDLKKLLNAEDRDLIGRMKSILGPFILRRLKSDVMQQLVPKIQQVEYVIMERQQESAYKEAIEEYRAVSQARMAKCSELNSKSLLAVLPRRQINNYFVQFRKIANHPLLIRRIYNDEDVIRFARKLHPIGAFGFECTLDRVIEELKNYNDFSIHRLLLHYGVNDKKGILSDKHVMLSAKCRALAELLPSLKKDGHRVLIFSQWTSMLDILEWSLDVIGLTYRRLDGSTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESMEEINEGDMPEKTMGEILSAILLS 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00421 740 Pfam Helicase conserved C-terminal domain 567 679 IPR001650 -
Vimu7g00421 740 Gene3D - 428 737 IPR027417 -
Vimu7g00421 740 MobiDBLite consensus disorder prediction 17 38 - -
Vimu7g00421 740 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 204 382 IPR014001 -
Vimu7g00421 740 Pfam SNF2-related domain 211 497 IPR000330 GO:0005524|GO:0140658
Vimu7g00421 740 Gene3D - 160 405 IPR038718 -
Vimu7g00421 740 CDD DEXHc_Snf 191 384 - -
Vimu7g00421 740 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 570 737 IPR001650 -
Vimu7g00421 740 FunFam Protein CHROMATIN REMODELING 19 isoform A 162 440 - -
Vimu7g00421 740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 323 721 IPR027417 -
Vimu7g00421 740 PANTHER SNF2/RAD54 HELICASE FAMILY 115 717 - -
Vimu7g00421 740 SMART ultradead3 187 392 IPR014001 -
Vimu7g00421 740 CDD SF2_C_SNF 557 690 - -
Vimu7g00421 740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 417 IPR027417 -
Vimu7g00421 740 SMART helicmild6 596 679 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00421 Vimu-Chr7 4601115 4609810 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00421 212 718 RAD5 or RAD16-like Gene Family AT5G22750 26.837 1.47e-45 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vimu7g00421 SNF2_N 5.8e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00421 K14439 - gmx:100806323 1306.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00421 7 4601115 4609810 Vimu7g00421 7 4601115 4609810 ECH