Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00418 ATGGGAACAATGGATGCATGTGTGTGTGCAGATCCAGATGCTGAGGTGATAGCACTATCTCCGAAGACTCTAATGGCAACAAACAGGTTTATATGTGAAGTGTGCAATAAAGGGTTTCAAAGGGAGCAAAACCTACAGCTTCACAGAAGAGGACACAATCTGCCATGGAAGCTGAAGCAGAAGAGTAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGTGTTCATCATGACCCTTCAAGGGCTCTTGGAGACCTCACTGGCATTAAGAAACACTACTCTCGCAAACATGGTGAGAAGAAATGGAAGTGTGACAAATGCTCCAAAAAATATGCTGTTCAATCAGATTGGAAGGCTCACTCCAAAACCTGTGGCACCAGAGAGTATAGATGTGACTGTGGCACCCTCTTCTCCAGGGACGTGGAGGAGGCAGAAGACTGCTCGCACGTGAGCACAAGAAGAAAAAACAAGGCAAAGCTCAACTTTGTTTATCGGGAACAACGCCCCTTATCCTTATTCCCATTCACGTGTAGTTATAAGCAACAATGTAAGAGGGGGCACAGGCTCAGGCACAGTGATACTGGTTTTATCACTCATAGGGCCTTTTGTGATGCTCTAGCACATGAGAGTGCAAGACACCCTTCGAACCTGAACCCTTTGGGAGCTCATCATCTGTATGGCACAAACCACATGAGCCTAGGCCTTGGTGCCCAACTGCAGAACCAAGCAGCATCTGCTAACAGCTTATTGAGCCTTGGAAGTGCACAAAAGTTTGAGCACTTAATCTCTCCTAATCTGCACCACTCATCTTCATTTGGAGTGCAATCACCACCCCATTCATCATTCTTCATGACTGACCCAAACCAAGCATTTCAAGACCTTCAGTCTCACCAACAAGGACCCTTATTCTCAACCAAGCAACTCCACGGTCTTATGCAACTCCCTGATCTACAAGGAACCACCACCAACAACTCCACCTCTGCCTCATCACTGTCTGCTTCAGCTAACAACGCCAATCTCTTCAACCTCAGCTTCTTTCCTAATACCAATACCAGTGGAAGCATAATGAACGACCAATTCAGCAACATAAGTGGAGGCAATGACCAAGGAACAACAACATTCTATAGTTCTAGTAGCCCTGTGAGTAACCAAGTTGGTTCAGGCTTGTCTTCACTCTTTGGTAATTCGTCTTTGCAACAAGATAGCATGTCCCCTCACATGTCAGCCACTGCATTGCTTCAGAAAGCAGCTCAAATGGGTTCAACCACCACCACCAATGGTCCCTGCTCTCTTCTGAGAGGAACGGAAGAATTAGGTATAAGGTCAAGGATGGAGAGTGAGCACAGTAACCATCTGCGCGGATTGATGAACTCCTTTGCCAATGGAAACGCTTCCATGTTTGGCAACGTGAAAGGGAATGAAAACAACCTTGGCCAGTTTCACAACGTTTCGGAGGAGCCTAAGAAGATGTCACAAAACCTTGGTTTGTGCTTTGGAGGGTCTGATAAGTTGACCTTGGACTTTTTGGGGGTTGGAGGAATGGTCAGAAACATGAACAGTGGTGGATTTTCACAACGAGAGCAACAACACTCCATGGGAACTATGAGCCCCTTGGATCCTAAATTGGAATCAGCACAACCAAACCAACACTTCGGAGCCTCAACACTCTAA 1683 0.4629 MGTMDACVCADPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRDVEEAEDCSHVSTRRKNKAKLNFVYREQRPLSLFPFTCSYKQQCKRGHRLRHSDTGFITHRAFCDALAHESARHPSNLNPLGAHHLYGTNHMSLGLGAQLQNQAASANSLLSLGSAQKFEHLISPNLHHSSSFGVQSPPHSSFFMTDPNQAFQDLQSHQQGPLFSTKQLHGLMQLPDLQGTTTNNSTSASSLSASANNANLFNLSFFPNTNTSGSIMNDQFSNISGGNDQGTTTFYSSSSPVSNQVGSGLSSLFGNSSLQQDSMSPHMSATALLQKAAQMGSTTTTNGPCSLLRGTEELGIRSRMESEHSNHLRGLMNSFANGNASMFGNVKGNENNLGQFHNVSEEPKKMSQNLGLCFGGSDKLTLDFLGVGGMVRNMNSGGFSQREQQHSMGTMSPLDPKLESAQPNQHFGASTL 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00418 560 Pfam Zinc-finger double-stranded RNA-binding 30 52 IPR022755 -
Vimu7g00418 560 ProSitePatterns Zinc finger C2H2 type domain signature. 32 52 IPR013087 -
Vimu7g00418 560 SMART c2h2final6 71 101 IPR013087 -
Vimu7g00418 560 SMART c2h2final6 30 52 IPR013087 -
Vimu7g00418 560 SMART c2h2final6 106 126 IPR013087 -
Vimu7g00418 560 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 10 528 IPR031140 -
Vimu7g00418 560 Gene3D Classic Zinc Finger 27 127 - -
Vimu7g00418 560 FunFam protein indeterminate-domain 12-like 9 77 - -
Vimu7g00418 560 SUPERFAMILY beta-beta-alpha zinc fingers 29 126 IPR036236 -
Vimu7g00418 560 ProSiteProfiles Zinc finger C2H2 type domain profile. 30 52 IPR013087 -
Vimu7g00418 560 MobiDBLite consensus disorder prediction 523 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00418 Vimu-Chr7 4570408 4573820 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00418 13 527 IDZ Gene Family AT2G02070 42.784 1.14e-101 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu7g00418 zf-C2H2_jaz 3.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00418 K25870 - gmx:100806198 731.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00418 7 4570408 4573820 Vimu7g00418 7 4570408 4573820 ECH