Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00417 ATGGCAGCACCTTTTTCTTCAGCATCTCTCTTTGGAATCAGAGAAGAGGATCAGAATCAGATGAAGCAGCAGCATTCCTCAACAACAACACCATCTTCTTCATCAACTCCAGCTGCACCACCACCCCAGAAGAAAAGAAGAAACCAACCTGGAACACCAAGCAAGTATCTTAACAATTTTACACAGAAAATAAAAAATAAAAAAATCTACTCTTCGGTTTATTTTATTTATTTATTGGTGGTTGGAATGGGAACAATGGATGCATGTGTGTGTGCAGATCCAGATGCTGAGGTGATAGCACTATCTCCGAAGACTCTAATGGCAACAAACAGGTTTATATGTGAAGTGTGCAATAAAGGGTTTCAAAGGGAGCAAAACCTACAGCTTCACAGAAGAGGACACAATCTGCCATGGAAGCTGAAGCAGAAGAGTAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGTGTTCATCATGACCCTTCAAGGGCTCTTGGAGACCTCACTGGCATTAAGAAACACTACTCTCGCAAACATGGTGAGAAGAAATGGAAGTGTGACAAATGCTCCAAAAAATATGCTGTTCAATCAGATTGGAAGGCTCACTCCAAAACCTGTGGCACCAGAGAGTATAGATGTGACTGTGGCACCCTCTTCTCCAGACGTGACAGTTTCATCACTCACAGAGCCTTTTGTGATGCTTTGGCACAAGAAAGTGCAAGAGAGCCACCCAATTTGAGCAGTGCCATTGGCAACCAGCTATTTGGAAACAGTAACATGTCCTTAGGCTTATCTCAGAATTTGGGTGCTCAGATTCCTTCAATCCATGACCAAAACTCCCAACCCAGTGACCTATTGCGTTTTTGTGGTGCACCAAGGACTGGTCCATTTGACCACATTCTCCCACCAAACATGGCCTCACCCTTCAGACCCTCCTCACACCAAACCATGCAACTTCAAAACCCTCCATTCTTCATGCCAGAATCAAACCAGAACTACCATGATCACCAACAAGGTTTAATCTCAAACAAGCCTTTTCAAGGAATGATACAACTATCTGACCTCAACAACAGCAACACCCCTTCTGCCTCCAACCTCTTCAATCTTCCTTTTCTATCCAACCGAGGCCACACCCCCAACTACTCCGAGGAACACCACTTCAACCCCACAGAAGGGTCTAATTTCTTCACAGAAGGCACCATAATCGGCACCGATCACCAAACAAGCTCCGCCACTGCCCCTTCTGTTTTCAGCACCTCTCTCCAAAACACCACCAACATGTCTCACATGTCAGCAACTGCACTGCTCCAAAAAGCTGCTCAAATGGGTGCTGCAAGTTCCAGCACCAACAACAGTGCCTCCTCTCTTCTAAGAAGCTTAGCATCCAAATCTGATCACAGGCCACTCCTCAGTGCTGCAAACTACAGCAACATCTTGAACTCCAGCGTGCAAGAGATGATGAACCTTCCCGGCTTCGAAGCATATGATCATGGCATCACCAACAAGGAACCAAAACTCAGCGTTGGAGGCTCTGATAGACTCACCCGGGATTTTCTAGGAGTTGCACAGCAACAACAACAGCAACGTGGGTTTAACTTGAGCTCTTTGGAAGCAGAGACAAACAATGCGGCGCCGTCAGGTCAATCTTTCGGAGGTGGAGCAAACTTTCAGTGA 1686 0.4585 MAAPFSSASLFGIREEDQNQMKQQHSSTTTPSSSSTPAAPPPQKKRRNQPGTPSKYLNNFTQKIKNKKIYSSVYFIYLLVVGMGTMDACVCADPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESAREPPNLSSAIGNQLFGNSNMSLGLSQNLGAQIPSIHDQNSQPSDLLRFCGAPRTGPFDHILPPNMASPFRPSSHQTMQLQNPPFFMPESNQNYHDHQQGLISNKPFQGMIQLSDLNNSNTPSASNLFNLPFLSNRGHTPNYSEEHHFNPTEGSNFFTEGTIIGTDHQTSSATAPSVFSTSLQNTTNMSHMSATALLQKAAQMGAASSSTNNSASSLLRSLASKSDHRPLLSAANYSNILNSSVQEMMNLPGFEAYDHGITNKEPKLSVGGSDRLTRDFLGVAQQQQQQRGFNLSSLEAETNNAAPSGQSFGGGANFQ 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00417 561 Gene3D Classic Zinc Finger 92 160 - -
Vimu7g00417 561 MobiDBLite consensus disorder prediction 12 34 - -
Vimu7g00417 561 SUPERFAMILY beta-beta-alpha zinc fingers 111 208 IPR036236 -
Vimu7g00417 561 SMART c2h2final6 188 208 IPR013087 -
Vimu7g00417 561 SMART c2h2final6 153 183 IPR013087 -
Vimu7g00417 561 SMART c2h2final6 112 134 IPR013087 -
Vimu7g00417 561 Gene3D Classic Zinc Finger 166 245 - -
Vimu7g00417 561 Pfam Zinc-finger double-stranded RNA-binding 112 134 IPR022755 -
Vimu7g00417 561 FunFam protein indeterminate-domain 12-like 91 159 - -
Vimu7g00417 561 ProSitePatterns Zinc finger C2H2 type domain signature. 114 134 IPR013087 -
Vimu7g00417 561 ProSiteProfiles Zinc finger C2H2 type domain profile. 112 134 IPR013087 -
Vimu7g00417 561 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 534 IPR031140 -
Vimu7g00417 561 FunFam protein indeterminate-domain 5, chloroplastic-like 166 245 - -
Vimu7g00417 561 MobiDBLite consensus disorder prediction 1 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00417 Vimu-Chr7 4555961 4562701 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00417 10 534 IDZ Gene Family AT2G02070 44.093 5.59e-122 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu7g00417 zf-C2H2_jaz 3.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00417 K25870 - gmx:100818072 751.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00417 7 4555961 4562701 Vimu7g00417 7 4555961 4562701 ECH