Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00416 ATGGGTAGTTGTGGAAGGGAAGGTGTAGTGAGACAGTACATAAGATCAAAAGTCCCTCGTTTAAGATGGACCCCTGAACTGCATCGTTGCTTTGTTTATGCCATTGAAACTCTTGGAGGTCATCACAAGGCTACTCCTAAGCTTGTTCTTCAATTGATGGATGTTAAAGGGCTGACAATTTCACATGTCAAGAGCCATCTGCAGATGTACAGAAGCATGAAAGGTGATTCCTGCCGACAAGACAAGACTTCCACCCAGCATAGAAAACAACATGATGATGAAGTGGGTGATGTTGGTTTCCACTCTTGTTTCAAATCCATTGGAAAAGAATCTGATTCCCAACCCAGCTGCAGTAATTTCTCCCTTAAAAGAGCTAGAATCGAGAAGACAAGTTTTCTCTCAGGATTCCCACAATGCAGCCAAAGAATATGTGAAGCAGTCCCAAATCCATACACTACTTTTTATGATTACCTGCAGAGCATGGCTGAGCAGAAGGGAATAAAGAAGATTTGTGCTGGTTCAATATTGCAGACTCAACCACTTTCCACAACTTTTCTTCCCATGCTACCAAGCCAAGCATCAGATTTTCTCCAGGTTGCCTACTTAAATGATAAACAGGCTTTGAATGAAGTTGAGAAGAGTTGTAGGGTAGAAGCAGAGGATGAAGACATGGGAGGTTGTGAGTTGTCACTGTCCATCTCATTGCCACAACCACATCCTTCTTCTCAGAGAAGTAATGCTTCTTCAGTCAGCGATATCAGTGAGGCCTTTTCATTGTGCCCTAAGTTTAACAACAACAACAACTACATGGGATGTTCTACTTCTTCTAATGTTTCAAACAAAGTTAATGTCGATCTATCTTTGGCCATTTGA 873 0.4181 MGSCGREGVVRQYIRSKVPRLRWTPELHRCFVYAIETLGGHHKATPKLVLQLMDVKGLTISHVKSHLQMYRSMKGDSCRQDKTSTQHRKQHDDEVGDVGFHSCFKSIGKESDSQPSCSNFSLKRARIEKTSFLSGFPQCSQRICEAVPNPYTTFYDYLQSMAEQKGIKKICAGSILQTQPLSTTFLPMLPSQASDFLQVAYLNDKQALNEVEKSCRVEAEDEDMGGCELSLSISLPQPHPSSQRSNASSVSDISEAFSLCPKFNNNNNYMGCSTSSNVSNKVNVDLSLAI 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00416 290 SUPERFAMILY Homeodomain-like 17 73 IPR009057 -
Vimu7g00416 290 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Vimu7g00416 290 NCBIfam myb-like DNA-binding domain, SHAQKYF class 19 73 IPR006447 GO:0003677
Vimu7g00416 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Vimu7g00416 290 Gene3D - 18 74 - -
Vimu7g00416 290 FunFam Myb family transcription factor 17 75 - -
Vimu7g00416 290 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 8 94 IPR046955 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00416 Vimu-Chr7 4520422 4524788 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00416 1 74 G2-like Transcription Factor Family AT1G14600 70.886 8.79e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vimu7g00416 Myb_DNA-binding 1.5e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00416 - - pvu:PHAVU_003G008400g 532.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00416 7 4520422 4524788 Vimu7g00416 7 4520422 4524788 ECH