Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00410 ATGGAAAAGGTGGCTGCGCCTCCGATTCTGATGCAGCGGAAGCGCGATCTGTCGTACGGCGTCGTTGCGGGGAGTCCGAACGAGAGCTGGAAGTGGGACTGGGACAGCGTGCGGTTCGCGGGGAAGCCTCCGAGCGACGACGTCGTGTTCGAGGAGGAGAGCGTCGCGGCGGTGGCTCCTCTCCAGCTCAACCTCGCGGGGAGGGTGAGCGGCGGTGGTAACAAGAGAGTGCGCTCGGGGTCGCCCGGAACGGCGACGTATCCGATGTGTCAGGTGGATAACTGCAGGGAGGATCTGTCGAAGGCGAAGGACTATCACAGGAGGCACAAGGTGTGCGAGGCGCATAGCAAAGCCTCCAAGGCGCTTCTTAGCAACCAAATGCAAAGGTTTTGTCAGCAGTGTAGTAGGTTTCACCCGCTGTCCGAGTTTGATGAGGGGAAACGGAGTTGCCGCCGTAGACTCGCTGGACACAACCGCCGCCGGAGGAAAACGCAGCCGGAAGATGTTACTTCCGCTACGCAGGCCCCCGCCGCCGCCGTCGCAGCAGCTGCAAATTTGGAAATCTTCAACTTGTTGACTGCAATAGCCGGAGCTTCACAGGGAAAATTTGAAGAAAGATCACAAGTTCCGGATAGAGAGCAGCTTGTGCAGATTCTCAACAGGATACCTTTGCCTGCGGATCTTGCAACCAAGTTGCGGGATGCTGGTAATGTCAACGGGAAAAAGGATCATGTACAATCGGAGACACCATCCTCCTATCACCATCATGACCAACTGAACCACACCCCAGCTGCCCCATTAACTATGGACTTACTTGCTGTTCTTTCCACGAGTCTGTCTGGGTCTGGCCCCGATGCCAATGCGTCCCCCTCTCAAAATCGAAGCTGCAGCAGTGATGGCGGTAGTGTTAAATCTAGGAGTAGTGCCGATCAGACGAGACAACAACACTTGTTTTCAGTTGGCGGAGAAAGAAGCAGTAGCAGTTCCCAGTCTCCAGTTGAAGATTCAGACTGCCAGGACGATGTTAGAGTTAATTTACCGCTGCAACTCTTTAGCTCCTCCCCAGAAGAGGACAGCTTGCCTAAACTTGCATCTTCAAGAAAGTATTTTTCGTCTGACAGTAGTAACCCTGTAGAAGAGAGGTCACCATCGTCTTCTCCTCCTTCTCCTCCTGTTGTGGAGATGCAGTTTGATTTGCAGGGTGGTGCTACAGCTCTAAAGCCGGAGAGCATCTCTTCTGGAAGAGGAGTTAATTCAAACAAGGAAGCTAGCCAAAGTCATAGTTGTAATATCTCTCTCGATCTATTAAAAGGGTCAAATAAAAGGATCGAACAACCTAGTTGGCTTCAAAGTGTTCCATTTCAAGCTGGGTATACATCTTCGGGCTCTGATCATTCACCTCCCAGTTTGAATTCAGATGCTCAGGATCGCACTGGTAGAATAATGTTTAAACTATTTGACAAGCATCCAAGCCATTTCCCAGAAACATTGCGAGCACAGATTTACAGTTGGCTTTCTAACAGGCCATCAGACATGGAGAGCTACATACGGCCTGGTTGTGTGGTCCTATCACTTTATGCTTCAATGTCTTCTGCTGCCTGGGAGAAACTAGAGGAAAACTTCCTCCAACATGTTCATTCTTTAATTCAAAATTCAGATTCTGACTTTTGGAGAAGTGGAAGGTTTCTAGTACATTCTGGCAGTCAATTGGCTTCACACAACGATGGGAAGGTACGCATATGCAAACCATGGAGAACGTGGAAGTCGCCAGAGTTGTTATCTGTGTCCCCTTTGGCAATTGTTAGTGGACAGGAAACCTCTATTTCATTGAAGGGCAGAAACCTGTCAACTCCTGGCACAAAGATCCACTGTACGGGTACTGGCTCTTACGCATCAGCGGAAGTCATCAGATCTTCATATCCTGGTGTGATGTATGATAATATAAAGTTAAGTGGTTTTAAAGTTCAGGATGTTTCACCCGGTGTTGTGGGTCGCTTTTTTATTGAGATTGAAAATGGTTTCAAGGGTAACAGTTTTCCAGTGATAATAGCCGATGAGACCATTTGCGAGGAATTGAGACCACTCGAGTCTGAATTTAACGAAGAGGAAAAAACATGCGATGCCATTTCAGAAGAGCATGAACATCATTTTGGAAGGCCGAGATCAAGGGAGGAGGCTTTGCATTTTTTGAATGAGCTTGGCTGGCTGTTCCAAAGAGAAAGGTTCTCATATATGCATGAGGTTCCATGTTATTCGCTTGACAGGTTCAAATTTGTACTCACATTTGCTGTGGAAAGAAACTGTTGTATGTTAATCAAAACCCTTCTCGATGTACTGGTTGATAAACACTTGCAAGGGGAGTCGTTGTCAACAGGGTCAGTGGAAATGTTGAATGCAATCCAACTCTTAAATAGAGCAGTGAAAAGAAAGAACATAGGCATGGTTGATTTGCTCATTCACTATACTTTACCGAACAAAAGTAGTACATCCAGGAAATATGTATTTCCTCCTAATCTTGAGGGTCCTGCTGGTATTACACCCTTGCACTTGGCAGCATGCACGTCTGGTTCTGAGGGTGTAGTTGACTCTTTAACAAGTGACCCACAGGAGGTAAATGTTTTCTCTGTACTCCTTTGCTATGCCATTGGTTTCACCGAAATTGGCTTGAAGTGCTGGGAATCCCTTGTGGATGCTAACGGGCAGACTCCACATGCATATGCTATGATGAGGAATAATAACTCTTATAATGTGCTGGTTGCCCGTAAACTTGCTGATAGACGAAGGGCAGAAATTTCAGTATCAATTGAGAATGAGATAGAGCAAGCCTCTCTGAGGGTAGAGCTTAACCAAAAGCAAAGTAACCTACTCAAACGAGGTCAGAGTTCTTGTGCCAAGTGTGCGACTGCAGAAAATCGCTACAACAGAAGATTTTCAGGTTCACACGGTTTGATTCACCGCCCCTTTATTTATTCAATGCTAGCCGTTGCTGCAGTTTGTGTATGTGTTTGTGTGTTCTTCCGTGGACGCCCTTGCGTAGGCTCAGTTGCTCCCTTCAGTTGGGAAAACCTAGATTTTGGCACAATGTAA 3087 0.4733 MEKVAAPPILMQRKRDLSYGVVAGSPNESWKWDWDSVRFAGKPPSDDVVFEEESVAAVAPLQLNLAGRVSGGGNKRVRSGSPGTATYPMCQVDNCREDLSKAKDYHRRHKVCEAHSKASKALLSNQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDVTSATQAPAAAVAAAANLEIFNLLTAIAGASQGKFEERSQVPDREQLVQILNRIPLPADLATKLRDAGNVNGKKDHVQSETPSSYHHHDQLNHTPAAPLTMDLLAVLSTSLSGSGPDANASPSQNRSCSSDGGSVKSRSSADQTRQQHLFSVGGERSSSSSQSPVEDSDCQDDVRVNLPLQLFSSSPEEDSLPKLASSRKYFSSDSSNPVEERSPSSSPPSPPVVEMQFDLQGGATALKPESISSGRGVNSNKEASQSHSCNISLDLLKGSNKRIEQPSWLQSVPFQAGYTSSGSDHSPPSLNSDAQDRTGRIMFKLFDKHPSHFPETLRAQIYSWLSNRPSDMESYIRPGCVVLSLYASMSSAAWEKLEENFLQHVHSLIQNSDSDFWRSGRFLVHSGSQLASHNDGKVRICKPWRTWKSPELLSVSPLAIVSGQETSISLKGRNLSTPGTKIHCTGTGSYASAEVIRSSYPGVMYDNIKLSGFKVQDVSPGVVGRFFIEIENGFKGNSFPVIIADETICEELRPLESEFNEEEKTCDAISEEHEHHFGRPRSREEALHFLNELGWLFQRERFSYMHEVPCYSLDRFKFVLTFAVERNCCMLIKTLLDVLVDKHLQGESLSTGSVEMLNAIQLLNRAVKRKNIGMVDLLIHYTLPNKSSTSRKYVFPPNLEGPAGITPLHLAACTSGSEGVVDSLTSDPQEVNVFSVLLCYAIGFTEIGLKCWESLVDANGQTPHAYAMMRNNNSYNVLVARKLADRRRAEISVSIENEIEQASLRVELNQKQSNLLKRGQSSCAKCATAENRYNRRFSGSHGLIHRPFIYSMLAVAAVCVCVCVFFRGRPCVGSVAPFSWENLDFGTM 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00410 1028 MobiDBLite consensus disorder prediction 237 255 - -
Vimu7g00410 1028 Gene3D - 754 965 IPR036770 -
Vimu7g00410 1028 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 29 804 IPR044817 GO:0003677
Vimu7g00410 1028 MobiDBLite consensus disorder prediction 350 395 - -
Vimu7g00410 1028 MobiDBLite consensus disorder prediction 411 425 - -
Vimu7g00410 1028 ProSiteProfiles Zinc finger SBP-type profile. 87 164 IPR004333 GO:0003677
Vimu7g00410 1028 Gene3D - 80 151 IPR036893 GO:0003677|GO:0005634
Vimu7g00410 1028 Pfam SBP domain 90 163 IPR004333 GO:0003677
Vimu7g00410 1028 SUPERFAMILY SBT domain 88 168 IPR036893 GO:0003677|GO:0005634
Vimu7g00410 1028 MobiDBLite consensus disorder prediction 280 335 - -
Vimu7g00410 1028 MobiDBLite consensus disorder prediction 350 382 - -
Vimu7g00410 1028 MobiDBLite consensus disorder prediction 153 174 - -
Vimu7g00410 1028 FunFam Squamosa promoter-binding-like protein 14 81 151 - -
Vimu7g00410 1028 MobiDBLite consensus disorder prediction 280 338 - -
Vimu7g00410 1028 MobiDBLite consensus disorder prediction 237 261 - -
Vimu7g00410 1028 MobiDBLite consensus disorder prediction 406 425 - -
Vimu7g00410 1028 SUPERFAMILY Ankyrin repeat 760 921 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00410 Vimu-Chr7 4470227 4475208 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00410 3 1028 SBP-box Gene Family AT1G20980 51.718 0.0 928
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vimu7g00410 SBP 1.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00410 - - gmx:100819004 1650.18