Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00400 ATGGCAGAGATGATAAGGAATCCAAGGGTGATGAAGAGAGCACAGGCTGAAGTGAGAGAGGTATTCAAGATGAATGGAAGGGTTGATGAAACTTGCATCAATGAAATGAAATATTTGAAGTTAGTTATCAAAGAGACATTGAGGTTACACCCACCAGCACCTCTTTTACTTCCAAGAGAATGTGGAGAAACATGTGAGATTAATGGGTATGATATACCAGTCAAAAGCAAGGTAATTGTAAATGCCTGGGCTATTGGAAGAGATCCAAACAGTTGGAGTGACCCAGAGAGGTTTTATCCTGAGAGATTCAATGATAGCTCTGTTGATTACAAAGGGAATAATTTTGAGTTGATTCCATTTGGTGCTGGAAGAAGAATATGCCCAGGTATCACATTTGGTTTGATGAATGTTGAACTCACACTTGCACTTATGTTGTATCACTTTGATTGGAAGCTTCCCAATGGAATGAAAGCTGAGGAGTTGGACATGACTGAGCAATTTGCACTAACTGTTAGAAGAAAAGATGGTCTGTTTTTGATTCCCTCCATTGCAACACAATGCTCATAA 567 0.3933 MAEMIRNPRVMKRAQAEVREVFKMNGRVDETCINEMKYLKLVIKETLRLHPPAPLLLPRECGETCEINGYDIPVKSKVIVNAWAIGRDPNSWSDPERFYPERFNDSSVDYKGNNFELIPFGAGRRICPGITFGLMNVELTLALMLYHFDWKLPNGMKAEELDMTEQFALTVRRKDGLFLIPSIATQCS 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00400 188 SUPERFAMILY Cytochrome P450 1 180 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu7g00400 188 PRINTS P450 superfamily signature 41 52 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu7g00400 188 PRINTS P450 superfamily signature 118 127 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu7g00400 188 PRINTS P450 superfamily signature 127 138 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu7g00400 188 PRINTS P450 superfamily signature 6 19 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu7g00400 188 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 120 129 IPR017972 GO:0005506|GO:0016705
Vimu7g00400 188 Gene3D Cytochrome P450 1 176 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu7g00400 188 PRINTS E-class P450 group I signature 81 105 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu7g00400 188 PRINTS E-class P450 group I signature 117 127 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu7g00400 188 PRINTS E-class P450 group I signature 127 150 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu7g00400 188 PRINTS E-class P450 group I signature 40 58 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu7g00400 188 Pfam Cytochrome P450 2 170 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu7g00400 188 PANTHER OS08G0105600 PROTEIN 1 182 - -
Vimu7g00400 188 FunFam Predicted protein 1 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00400 Vimu-Chr7 4403424 4403990 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00400 1 182 Cytochrome P450 AT3G26300 55.495 1.39e-72 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00400 - - gmx:100818508 314.694