Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00397 ATGCAGGATATCTTTTCTGCTGGAGGAGATACAGCTGCTTCTACCATAAATTGGGCAATGGCAGAAATGATAAGGGATCCAAGAGTAATGAAGAAAGCACAAGATGAGGTGAGAGAGGTATTCAATATGAAAGGAAGGATTGATGAAATATGCATGGATGAACTCAAGTACTTGAAATCAGTGGTCAAAGAGACCTTAAGGTTACACCCACCAGCTCCTCTTTTACTTCCAAGAGAATGTAGAGAAGCATGTGAGATTAAAGGGTATCATATTCCAGCTAAAAGCAAGGTAATTGTGAATGCTTGGGCAATTGGAAGAGATCCTAACTATTGGAGTGAAGCAGAGAGGTTTTATCCAGAGAGATTCAATGATAGCTCTATTGATTACAAAGGGAGTAGTTTTGAGTACCTTCCATTTGGTGCTGGAAGAAGAATATGCCCAGGTATCACATTTGGTTTGATAAATATTGAAGTGGCACTTGCATATTTGTTGTATCACTTTGATTGGAAGCTTCCAAATGAAATGAAAAGTGGGGACTTGGACATGACTGAGGAATTTGGAGTGACTGTTAGAAGAAAATATGACCTATGCTTGATGCCAGTCAATTATAGCCATGCAAGAAAGTTGTGA 630 0.3905 MQDIFSAGGDTAASTINWAMAEMIRDPRVMKKAQDEVREVFNMKGRIDEICMDELKYLKSVVKETLRLHPPAPLLLPRECREACEIKGYHIPAKSKVIVNAWAIGRDPNYWSEAERFYPERFNDSSIDYKGSSFEYLPFGAGRRICPGITFGLINIEVALAYLLYHFDWKLPNEMKSGDLDMTEEFGVTVRRKYDLCLMPVNYSHARKL 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00397 209 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 139 148 IPR017972 GO:0005506|GO:0016705
Vimu7g00397 209 PRINTS E-class P450 group I signature 59 77 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu7g00397 209 PRINTS E-class P450 group I signature 136 146 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu7g00397 209 PRINTS E-class P450 group I signature 146 169 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu7g00397 209 PRINTS E-class P450 group I signature 100 124 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu7g00397 209 PRINTS E-class P450 group I signature 16 42 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu7g00397 209 Gene3D Cytochrome P450 1 196 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu7g00397 209 Pfam Cytochrome P450 3 189 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu7g00397 209 PANTHER OS08G0105600 PROTEIN 2 204 - -
Vimu7g00397 209 SUPERFAMILY Cytochrome P450 2 200 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu7g00397 209 PRINTS P450 superfamily signature 7 24 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu7g00397 209 PRINTS P450 superfamily signature 146 157 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu7g00397 209 PRINTS P450 superfamily signature 60 71 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu7g00397 209 PRINTS P450 superfamily signature 137 146 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu7g00397 209 FunFam Predicted protein 5 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00397 Vimu-Chr7 4389293 4389922 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00397 1 201 Cytochrome P450 AT3G26230 58.128 8.37e-80 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00397 - - pvu:PHAVU_003G009400g 377.481