LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu7g00388	ATGGGAACACAAAAATCTAATATGTTTGATACAGCTTACAATTATTTGGTGCCTGAAGATCAGGAAATTCTTGACAAGCCAACACACTGGACTCCTTCTATGCAGGCATATAACAATTCTGCGTCTACTCCGATTCCCTTTTTATACCAACACGCAGCTGGTTACATGCCTCTCTACATGTGGCCAAACCAGGCAAACAGCACAGTACTTCAATCTAATGTTTTGCAGGATCCAATGAAGCTCTCCAATAAACCTACAGTATCTGAGGATGCTGTACTGGCCTTTTCAGAAATAGTACACAGGACTTTTGGCGAGCAAAACCTAAATTCAATAAAAAAATGTGCTAGAAACTTACAACCTAAAAGTTTAATACCTAAGGAATCAAGAGGAGATGGAAGCAAATCTTCGATACTGAAAAACAACAAGGAGAGAGTGTTGTGCAGTGAAGCATATGGAAACAAGGGATCACTACATGAAGACCTTCTCACTGCTAATGATTTTCCTTCAACTAAGAAGCAACACTGTAATTTGGTGCTTGAAAATGATGCAATTGGCACTAACACTGAACTTGTGAAGTTGGAAGAGGATGAAATAAGAAGAGAAAGAAAAAGACAGTCGAATAGGGAATCAGCTAGGAGATCAAGGATGCGGAAAGAGAGAGAATGTGAAGAGTTACATAAGAAAATGGAAATTCTTAAGGATGAAAACTCCATGCTCACACAAAGGCTCAAGAGTCTTTCTGAGGAATGTCTGGAAATCTGCAATGAAAATGATGCCATAGAGGTCCATCACTTAAACTTCATCGCCTATTTATTGAATTATTTACCGTTCATTCAAATGTAG	843	0.3855	MGTQKSNMFDTAYNYLVPEDQEILDKPTHWTPSMQAYNNSASTPIPFLYQHAAGYMPLYMWPNQANSTVLQSNVLQDPMKLSNKPTVSEDAVLAFSEIVHRTFGEQNLNSIKKCARNLQPKSLIPKESRGDGSKSSILKNNKERVLCSEAYGNKGSLHEDLLTANDFPSTKKQHCNLVLENDAIGTNTELVKLEEDEIRRERKRQSNRESARRSRMRKERECEELHKKMEILKDENSMLTQRLKSLSEECLEICNENDAIEVHHLNFIAYLLNYLPFIQM	280

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu7g00388	280	MobiDBLite	consensus disorder prediction	200	220	-	-
	Vimu7g00388	280	Coils	Coil	208	249	-	-
	Vimu7g00388	280	Pfam	bZIP transcription factor	195	252	IPR004827	GO:0003700\|GO:0006355
	Vimu7g00388	280	CDD	bZIP_plant_GBF1	200	250	IPR045314	GO:0003700\|GO:0006355
	Vimu7g00388	280	PANTHER	G-BOX-BINDING FACTOR 3-RELATED	26	261	IPR044827	GO:0003700\|GO:0006355\|GO:0043565
	Vimu7g00388	280	SUPERFAMILY	Leucine zipper domain	198	253	IPR046347	GO:0003700\|GO:0006355
	Vimu7g00388	280	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	197	249	IPR004827	GO:0003700\|GO:0006355
	Vimu7g00388	280	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	202	217	IPR004827	GO:0003700\|GO:0006355
	Vimu7g00388	280	Gene3D	-	188	255	-	-
	Vimu7g00388	280	SMART	brlzneu	195	259	IPR004827	GO:0003700\|GO:0006355

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu7g00388	21	261	bZIP Transcription Factor Family	AT4G36730	28.676	5.31e-17	77.8

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Vimu7g00388		bZIP_1	4.7e-15	CL0018

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu7g00388	K09060		-	gmx:102665715	398.667