Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00374 ATGACGAAACACAGGTATAGGGAAGCTGTACAAATAAGAAAAAAAATAGTACTGCGGCTAAATAGTCCATATTTCCCCTTGATTGGAGATACCTTCCAAGCACTGGTCATGAAGAGGATTCCGGATATTTTTCTGAGGAAATATGGGACCCAGCTTTCTACAGTTGCTACCCTCACTGTTCCTGATGGTAGTATTTGGCGTATAGGATTGAAGAAAGCTGACAGCAAAATTTGGTTTGTTGATGGTTGGCAAGATTTTGTCCAACGGTATTCCATTGGTGTTGGATACTTTTTGGTGTTCATGTATGAAGGGAATTCATCCTTTATTGTTCATATTTTTAATTTGAGTACCTCTGAGATAAATTATCAATCGGCTATGAGAAATCATATGGAAGGACCCTGCTTTGTTAATTACAATCATATTTTCGAGGAAATGGAAGACATAGATTCCATTGATTTGTCAGATTTGTCACCTTCGTATCTTACATCTGGTGCCATGCAAAACAAGGGTTTTGCAGGATCTGTAGATCAACTGACACCTGGGAAGAGTCATACTCCAGCTCTGCAGAATTTGTTCAATGGTGGCTCAAAACTGAATCGTGTAAACTGGGGTGATGGTGGGAGTTCTTACTCTTCTAAGAGTGCCAATTCACAAGGTAGCCAGTCAACCAGAGACATAGGTGTTCAGTTTAATGCTGTTGAGTTTAAAAGGTCCACCGATGAATTGAAGTTGCGTTATTCTAATGAGGAAGCAGTTAATAAAACTGCAAAAAAGAAGCGGAAATCAGAGTCCCAGGGCGAGGAACCCTCAGGTGAAAATGAAGAGGAGGCAGAAATGCGCTATAGGTTTTATGAAAGTGCATCTGCAAGGAAAAGAACAGTGACAGCAGAAGAAAGAGAAAGGGCAATTAATGCATCAAAAGCATTTGAACCCACAAATCCTTTCTGCAGAGTTGTCCTGCGACCGTCCTATTTATATAGAGGATGCATAATGTACCTGCCTTCTTGCTTTGCGGAGAAGAATCTGAATGGGGTATCAGGATTCATTAAACTTCAGTTGCCCAATGGCAGACAGTGGTCGGTTCGCTGTCTCTACAGAGGAGGTCGAGCCAAGTTAAGCCAAGGATGGTTTGAATTCACCGTGGAGAACAATCTGGGGGAGGGTGATGTATGTGTGTTTGAGCTCCTTAGAACAAAGGAAGTTGTGCTGCAAGTTACTGTCTTTCGTGTAACTGAAGATGCAAGCTTGTTGAACTCTCCTCCTGTGCAGCAGCTGAGCCAAAATATGAGCCACACCAAACTCTTGAACCCTCATTTGCAGCATCGCGTCAGCAGTACAGTGAAATTGATTAGAAATTAG 1359 0.4194 MTKHRYREAVQIRKKIVLRLNSPYFPLIGDTFQALVMKRIPDIFLRKYGTQLSTVATLTVPDGSIWRIGLKKADSKIWFVDGWQDFVQRYSIGVGYFLVFMYEGNSSFIVHIFNLSTSEINYQSAMRNHMEGPCFVNYNHIFEEMEDIDSIDLSDLSPSYLTSGAMQNKGFAGSVDQLTPGKSHTPALQNLFNGGSKLNRVNWGDGGSSYSSKSANSQGSQSTRDIGVQFNAVEFKRSTDELKLRYSNEEAVNKTAKKKRKSESQGEEPSGENEEEAEMRYRFYESASARKRTVTAEERERAINASKAFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGFIKLQLPNGRQWSVRCLYRGGRAKLSQGWFEFTVENNLGEGDVCVFELLRTKEVVLQVTVFRVTEDASLLNSPPVQQLSQNMSHTKLLNPHLQHRVSSTVKLIRN 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00374 452 ProSiteProfiles B3 DNA-binding domain profile. 316 411 IPR003340 GO:0003677
Vimu7g00374 452 CDD B3_DNA 39 114 IPR003340 GO:0003677
Vimu7g00374 452 SUPERFAMILY DNA-binding pseudobarrel domain 36 115 IPR015300 -
Vimu7g00374 452 MobiDBLite consensus disorder prediction 251 268 - -
Vimu7g00374 452 Gene3D - 293 413 IPR015300 -
Vimu7g00374 452 MobiDBLite consensus disorder prediction 251 278 - -
Vimu7g00374 452 MobiDBLite consensus disorder prediction 173 223 - -
Vimu7g00374 452 SUPERFAMILY DNA-binding pseudobarrel domain 309 410 IPR015300 -
Vimu7g00374 452 CDD B3_DNA 314 409 IPR003340 GO:0003677
Vimu7g00374 452 Gene3D - 21 117 IPR015300 -
Vimu7g00374 452 PANTHER B3 DOMAIN-CONTAINING 29 405 - -
Vimu7g00374 452 SMART B3_2 316 411 IPR003340 GO:0003677
Vimu7g00374 452 SMART B3_2 32 116 IPR003340 GO:0003677
Vimu7g00374 452 Pfam B3 DNA binding domain 38 114 IPR003340 GO:0003677
Vimu7g00374 452 Pfam B3 DNA binding domain 319 409 IPR003340 GO:0003677
Vimu7g00374 452 ProSiteProfiles B3 DNA-binding domain profile. 40 116 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00374 Vimu-Chr7 4231248 4232963 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00374 39 412 B3 DNA Binding Superfamily AT3G18990 50.524 4.31e-119 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu7g00374 B3 8.3e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00374 - - gmx:100806715 709.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00374 7 4231248 4232963 Vimu7g00374 7 4231248 4232963 ECH