Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00370 ATGGCGAATATACAAAGAGCCCACCAGAGAAGACGGAGCTTGGCCTCTTCAATGAGATCATTGATGATGTCCATCATGGGTGTGGGTGTTAGAGGACCCATCCGAACACCTTGCCACTTTCAAATATGGCATGGCAATTTCACAGCGACAACCTCGCTATCTTTGTTCGGTTTCAGTTTGTTAGCTATTTCTATATCAGCTTATACTAATAAGCTTGCCATAAGAAATTATGCCTTTTCAAGTGCTCATCTTTTTCCTGAAATTGACACAACTAATGTTGAAGATGACGCACTACTAGCCCCAGCACCAGCACCAGAAATAGAATTTCGAAACGATGAACCCCTTACTCCACCACCAACTAGAAAAACAAATGAAAGACTGAAGAAGGCCTATGTTGCTTTTCAGGCATGGAAGAAGGCCATTCACTCCGACCCTTTGAACATCACCGGCAACTGGGTTGGTGAAGATGTTTGCTCTTACAATGGTGTGTATTGTGCTCCTGCCCTTGATGATCCTACCCTGAATGTGGTTGCTGGCATTGATCTGAACAATGCAGACATTGCTGGGAGCCTCCCTGAAGAATTGGGACACTTGCAAGATATTGCACTTTTCCACATTAACTCCAACAGATTCTGCGGTGTTATCCCAGAGAGCTTGCTGAATCTTACACTTGTGCATGAGTATGATATCAGCAACAATCGCTTTGTTGGTCGGTTTCCTTCTGTGGTCCTCACATGGCCGAACTTGAAGTACCTGGACCTTAGGTTCAATGACTTTGAAGGACCCTTACCCCCAGAGCTTTTTGAGAAGGACCTCGATGCAATCTTTTTGAACAACAACCGTTTCTCATCCTTCATTCCAGACACCATAGGAAAATCCAACGCCTCGGTCATCACCTTTGCCTACAACAATTTCAAAGGCTGCATTCCGAGCTCTTTCGGAAACATGAAGAACTTGAACGAGATTGTGTTCGTAGGAAACAACCTCGGAGGATGCTTCCCACAGGATGTTGGAAAGATAGAAAACCTGACGGTTTTGGATTTAAGCGACAATGGGTTTGAAGGGACTCTTCCTAACTTGTCAGGACTGAAGAAGGTTGAGGTGATAGACGTTTCGCACAACAAGCTCAGTGGATATGTGTCTAACACTGTGTGCCAACTTCCTTCCTTGAAGAACTTCACATTCTCTCACAACTACTTCTATGGAGAAGCTCAGAGTTGCGTGCCTTCACTCAATTCTTTGGTGGCTATGGATGACTCATACAATTGTTTGTCTGGAAGGAAGGATCAGAATGATAACTCGCCCTGTGGATTGCAACAAGCACTGTGGAGAAGGCAAAGAGAATGGCCATAG 1353 0.4472 MANIQRAHQRRRSLASSMRSLMMSIMGVGVRGPIRTPCHFQIWHGNFTATTSLSLFGFSLLAISISAYTNKLAIRNYAFSSAHLFPEIDTTNVEDDALLAPAPAPEIEFRNDEPLTPPPTRKTNERLKKAYVAFQAWKKAIHSDPLNITGNWVGEDVCSYNGVYCAPALDDPTLNVVAGIDLNNADIAGSLPEELGHLQDIALFHINSNRFCGVIPESLLNLTLVHEYDISNNRFVGRFPSVVLTWPNLKYLDLRFNDFEGPLPPELFEKDLDAIFLNNNRFSSFIPDTIGKSNASVITFAYNNFKGCIPSSFGNMKNLNEIVFVGNNLGGCFPQDVGKIENLTVLDLSDNGFEGTLPNLSGLKKVEVIDVSHNKLSGYVSNTVCQLPSLKNFTFSHNYFYGEAQSCVPSLNSLVAMDDSYNCLSGRKDQNDNSPCGLQQALWRRQREWP 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00370 450 FunFam Leucine-rich repeat extensin-like protein 1 131 292 - -
Vimu7g00370 450 Pfam Leucine Rich repeat 247 260 IPR001611 GO:0005515
Vimu7g00370 450 Pfam Leucine rich repeat N-terminal domain 133 165 IPR013210 -
Vimu7g00370 450 ProSiteProfiles Leucine-rich repeat profile. 342 364 IPR001611 GO:0005515
Vimu7g00370 450 SUPERFAMILY L domain-like 135 426 - -
Vimu7g00370 450 Gene3D Ribonuclease Inhibitor 128 294 IPR032675 -
Vimu7g00370 450 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 293 380 - -
Vimu7g00370 450 Gene3D Ribonuclease Inhibitor 295 441 IPR032675 -
Vimu7g00370 450 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 84 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00370 Vimu-Chr7 4202208 4204684 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00370 124 436 Trihelix Transcription Factor Family AT3G19020 65.605 2.52e-152 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00370 - - gmx:100804536 535.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00370 7 4202208 4204684 Vimu7g00370 7 4202208 4204684 ECH