Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00354 ATGGATCGTTCTGCGATGACTGTTGGGCCAGGAATGGATGTGCCAATCATGCATGACAGTGATAGGTATGAGCTGGTCCGTGATATTGGGTCGGGGAATTTTGGGGTGGCTAGGCTCATGAGGGACAAGCACACTCAGGAGCTTGTTGCTGTGAAGTATATTGAGAGAGGTGAAAAGTTTGGGTTTGGGTGGGGGATTTTGGCAACTGAAGTCTTGGTGGTGGGTGCTTTGGTTTTCAGTTGGATGGTGCTAAAAGAGATGTTGCGGATTGATAGGGTGTCCATCTGGATTTCTATAGATGAAAATGTACGAAGGGAAATTATAAATCACAGATCATTGAGGCATCCCAATATTGTCAGGTTCAAGGAGGTCATACTAACCCCTACACATTTGGCTATTGTGATGGAATATGCCTCTGGAGGAGAGTTATTTGAACGGATTTGCAAAGCAGGAAGATTTGGTGAAGATGAGTTACCGTTTACCCTTAATGCCTATTATGTTTTGCTGCAGGCACGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTTCTGTCATGCAATGTTGGAGAACACACTGTTGGATGGTAGTCCAGCTCCTCGTTTGAAGATTTGTGATTTTGGGTATTCGAAGCCCAAGATCAAGAAATTTCTTCATCTGTTCTTTGCATTTGTGGATCAGTTTGTACTATCTTCCTCTGTACTACATTCACAACCAAAATCTACAGTCGGTACCCCTGCATACATTGCTCCTGAAGTTTTGCTTAAGAAAGAATATGATGGCAAGATTGCAGATGTGTGGTCCTGTGGGGTGACCTTATACGTCATGTTGGTAGGTGCATATCCTTTTGAGGATCCAGAGGAACCTGCAAATTTCCGAAAGACAATTCAGAGGATTTTGAAAGTCCAGTACTCAATTCCTGATTATGTTCATATATCTCCCGAATGTCGTCATCTAATCTCAAGGATCTTCGTTGCAGATCCTGCACAGAGAATAACTATTCCTGATATTCGAAGCCATGAGTGGTTTTTGACGAACCTTCCAGCAGATCTGATGGTGGACAGCACAATGAGCAACCAGTTTGAGGAGCCTCAACAACCAGTGCAGAGCGTTGAAGAGATCATGCAGATAATTAGAGAGGCTACAATTCCTGGAGCCAAAACTCAGTCTCTCAACCAGTATCTCACTGGTAGCTTGGACATGGATGATGATGACATGGACGAGGACCCAGAGACAGATTCTGATCTCGATATTGATAGCAGTGGAGAAATAGTTTATGCAATGTAA 1287 0.4351 MDRSAMTVGPGMDVPIMHDSDRYELVRDIGSGNFGVARLMRDKHTQELVAVKYIERGEKFGFGWGILATEVLVVGALVFSWMVLKEMLRIDRVSIWISIDENVRREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICKAGRFGEDELPFTLNAYYVLLQARFFFQQLISGVSFCHAMLENTLLDGSPAPRLKICDFGYSKPKIKKFLHLFFAFVDQFVLSSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPANFRKTIQRILKVQYSIPDYVHISPECRHLISRIFVADPAQRITIPDIRSHEWFLTNLPADLMVDSTMSNQFEEPQQPVQSVEEIMQIIREATIPGAKTQSLNQYLTGSLDMDDDDMDEDPETDSDLDIDSSGEIVYAM 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00354 428 ProSiteProfiles Protein kinase domain profile. 23 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g00354 428 FunFam Serine/threonine-protein kinase SRK2A 138 351 - -
Vimu7g00354 428 Gene3D Phosphorylase Kinase; domain 1 1 72 - -
Vimu7g00354 428 MobiDBLite consensus disorder prediction 397 421 - -
Vimu7g00354 428 Pfam Protein kinase domain 100 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g00354 428 Gene3D Transferase(Phosphotransferase) domain 1 138 350 - -
Vimu7g00354 428 PANTHER SERINE/THREONINE KINASE 22 373 - -
Vimu7g00354 428 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Vimu7g00354 428 Gene3D Phosphorylase Kinase; domain 1 82 137 - -
Vimu7g00354 428 MobiDBLite consensus disorder prediction 400 418 - -
Vimu7g00354 428 SUPERFAMILY Protein kinase-like (PK-like) 15 371 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00354 Vimu-Chr7 4068293 4071877 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00354 22 354 CBL-interacting serine-threonine protein kinases AT5G25110 36.152 3.53e-53 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vimu7g00354 Pkinase 7.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00354 K14498 - gmx:100804702 600.897