LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu7g00351	ATGGAGTGTCTCTTGGGTTTTGCATCTTCTGTTTCAAGAGATTTAGTGTGTGGAGCATTAAATCAATTACGTTATCCTTGTTGCTTTAAAAATTTCGTCAAAGGACTTGAAGAAGAAGAGAGCAATTTGATTATAACGAAAGATAGTGTCCAAAAATTTGTTACGCATAACAAAAAACAAGCGAGAAAGCCCAGTGAAATTGTGGACAAGTGGCTGGAAGATGCTATCAATGATGTACACAATGTCAATCAGTTGCTGGAAGAGGCAAGAACAAAAAAACATTGTTGCTTTGGACACTGTCCAAATTGGATTTTGCGATACCATGTTGGAAAAAAGTTAGCAAATAAAACTATGGACCTCGAGAAGTTCATTGAAAAGGGTAGAAAATATGTGCCATTTGACCGCATCGCTACGCTTCCTTCAAACACCCTTGATATGCTTTCAGAAAAATGCATGAATTTTGAGAGTAGACAATATGCTTATGAGCAACTACTGGATGCAGTGAAAAATAATGATGTTTCCATGATTGGGTTGTATGGGATGGGAGGTTGTGGTAAAACCACATTAGCAATGGAGGTTAGAAAATTAGTAGAAGCAGAGCATCTTTTTGAAAAAGTTCTTTTTATAGCTGTTTCTAGTACCGTGGAAGTTCGGAGGATTCAAGAAAAAATAGCAAGTTCACTACAATTTGAATTTCCAGAAACCGAAGAAATGCAGAGAGCCCAAAGATTGTGCTCAAGATTAACTCAAGAAAAAAATATTTTTATAATTCTAGATGATGTGTGGGAGAAGCTTGACTTTGGTCGTATTGGGATTCCTTCTTCTGAACACCATAAAGGCTGCAAGATTCTCATTACCACTAGATCAGAAGCAGTTTGTACTTTAATGGATTGTCAAAGAAAGATTTACTTGCCAATTTTAACGGATGAAGAAGCATGGACTCTTTTCCAAAATAAAGCACTTATATCAGAAGGCACCCCTCATACCTTAAAGAATCTGGGAAGATTAATTTCCAATGAATGTAAAGGATTGCCTGTTGCCATTGCAGCTGTTGCTTGTAGTTTGAAGGGAAAAGCTGAGACGGTATGGAGTGTTGCATTAAATAAATTAAGACGTTCCAAGCCAATAAATATTGAAAGAGGTTTGATTGATCCCTACAAGTGTCTACAACTGAGCTATGATAATTTAGATACTAAAGAAGCTAAATCACTTTTCCTATTGTGCTCTGTGTTTCCTGAAGATTCTGAAATTCAAGTTGAAATTTTAACAAGATGTGCAATAGGATTAGGTGTAGTTGGAGAAGTTGACTCATATGAAGAGGCAAGGAGTGAAGTGATTGCAGCTAAAATTAAGCTTGTTAGTTGTTGTTTATTGTTGGATGCAGATAATGAACGTGTCAAAATGCATGACATAGTTCGTGACGTGGCCCACATAATAGCACAAAATGAGAATAAGAAGATCAAGTGTGAAGTGGAAATAGATGTTACAGTGGAACAAAATTCTGTAAGATATCTATGGTGTTCCAAATTTCCAAATGATTTGGATTGCTCCAATCTTGAGTTTTTATGCTTACATACAATTATGAAAGGATTTGAAGGAATTTTCAAAAGAATGGGAAAGCTCAAAGTTTTGCTTCTTTGCAACGATGAGGATGAAAAAACTCCATTGTCAACTACATCTTTGAAAACATTAACAAATCTTCGAGATCTATTCATTTCCAATTTTGAATTGAGCGACTTCTCATTTTTAAGCGGTACGAAGAATCTTCAAACTCTCTCGTTATATGATTGTTCACTGCCTTCATTTCCTGAATTACAAACCGATGTTGCAATTACACTAAAATTGTTAGAGTTGAATGAATGTTACATTAAAGTGAAAAATTTTGAAGTGATGAAGAGAATCCCGCTTTTAGAAGAGTTGTACATTATTGAAATTGAAGGAGAATGGGATGCTAACAGTGAAGACAATATTGAATTCTTTAAGACGTTTAGTGTCCCTCAAACACTGCAAAGGTATGGAATTGTATTAGGGTCTGATAACTTTTATCATTATAATGATGGAGATATTTACATTGATGGCAGAACTTTATTACTTAACCATTTTGACATATCAAATGAGGTAATAAAGGGTTTGGCAAAAAAAGCAAAGGATCTATTTGTACGAAATATTGATGGAGGTGCAAAAAATATGATCCCTGATATATTTGAAATTGAAGGAGGAGGTTTGAATGAGTTGAATACGTTGGAGATACGTGATTCTGCAGGGATAAAGATTTTGATTGACACTCGTAGTCACTCGAGTGAGGTCGTGACTCTCTTCTCCAAGTTGCATACGTTGGAAATGAAGCGCATGGAAAATCTAAAAGCTATTTGGCATTGTTTTCTTCCTACCAATGGACCTTTTGAGAACTTAGAGAACTTGTATTTAAGTAATTGTCCACGGTTGACATTTCTCTTCACATATGCGGTTGCTCGAAATTTGGTAAAATTGAAAATATTAAAAATATCAAGATGTGATGAACTGAAGCATATATTAACATATGATGAGAAAAGTCAAGATGAATTCACCACAGGGCATCCTCTACAAATCTTCCAGAATCTGCTAGATGTAAAGATAAAAAGGTGTCGAGAACTAAAACATATATTCCCAGCCAACATTGTTGGAGGCTTAACTCAATTGAAAGTTCTCGAGATAAGAGAATGTGACAAGCTAGATCAAATAATTGGAGATATTGTTCCATTAACGAAGCAGCATAGAAAAGAAGAACTTGATGAAATCGTTGAGGAAGCATCTAAAGCTAAGACCTTGACTTCTTTGGAAGAATTGTTCATACATTGGTGCAAAAGTTTGAAGGATATAGTAACTCACGAAAAGGTCAATAAAAATCAGGAGGAAAGCATTGTTGAGGATGACCATATTAGTGAATGTGACTCATTGGAAGTAGTCTTTCCAAAGTCTTATATTTGGGCGGATCCCAAGAATTCACTTACTCTCCAACATCTTACCACATTAACAATATGGAAATGTGGAAATATGGAAGTAATCTTTCCAAAGTCTGTTGTAAGATGCTTACCAGAGTTAAAGAAAGTAACCATAAGAGAGTGCATGGAATTGAAGCAGATCATCGAAGAAGACGGGTCCAACCTTCTTTCCATAGATGGAGGCTCTGAAGTAGAGGAGATTATTGGATGTGATAAAGAAGCTTCAAAGAATTATTTTGCCTTCCCAAATCTTGAAAAACTAGAAATAATTGAATGTGTGAAATTGGAAGTAGTCTTTCCAAAGTCTGTTTTAAGATGCCTACCAAAGTTGAAGCTTTTGAAGATAATCCAATGCAAAGAATTAAGTCAAATCATTGAAGGGGATATAAATTTGTCTAATATTCTTTCTCCTCAACCATGCTTCCCAAAACTAGAAGCATTGCATGTTGATGATTGTCACAAGTTAAAAAGATTTTTCTCTGGATCTGCTTCTAATGACCTTCCCAATCTTCATCTTCTGGCCATAAATGGAACGTATGAACTAGAAGAGCTTGTTGGATGTAAACAAGGAATGACTAAAGTTGAGCTTCCAAGACTCAAACTTTTAATATTTATGCATCTTCCAAACTTCCGTCAAGAAATTGAATTGCATAATTTAAAGAATTGCATTGTCTACAAATGTCCCAAACTGTCTTTGACTTCAACAACTAGTCTTGAGAAGCTCCTTGAAGATTTTCCTCACAAAGATTTCATAAACACTGAACTTGGTCCTTCGGAACTTAAAGGCATAGTAAGATCCGTATCTGAATATTCAACTATTAATGGTAGCAGTGAGTTCACTTCATCACAGGAGATTGAGGTTGTAGGAAATGAGAACATTAAAGAGGGCTCTTTAGTAGAAGGTTCTAAGACAAAATCCTCATCAACTACTGGTGTTGAAGACATTGGCATTGGAAGTGGCGTTGAAGACATTGGCATATATGAAGATGCAACTAGTGGTAGCAGTGAATTGACTTCATCACAGGAGATTGAGGACGTAGGAAATGAGAGCATTAAATCTTCATCCACTGGAGTTGAAGACATTGGCATTGGAGATGCTGTTGCAACTCACATTGAGTCTGGTGGCGAGGACATACTTGCACTAGATTCCAAGGTAGTTGAACAAGATGATAAGATGAATGAAGGCAAGCCAAGAATAGTGGCAGGCCAACGAATCCAAGTAGAAGAAGGGTTGAACCTTTTGCATAAACAAGAGGGAATAGATGTTGTTCCTAACAACAACATTGACATTTCTTCAGATATCCGTACAAGATTGGGAGCATATAAACATTTTGTTGATATGGATGATGCACAGATTTCTCTTCTGGTGGAGGCAATAACAACATATCCGCATCTCTGGAATGCTTCCAAGAAGTTTAGTGAGCGTTTTCAAGCTTGGAGGTTGAAAATTTTGGCAGATATGTTGTTGTTCCTCCAGAAGGAAAGTGTGGATAGTATTATTCCTCAAAGAGAAAAAGAGTTCCATAAGCTATGTGAAGAAGCTATTGAAGTTGGATTTGAGAGTTCCTGGGTAGAGGAAATGCGTCAACGTGTTGTGGCGAGGGATCCTAAGTTGGAAGAGGACATTGCTAAGAGACAAATACATGAGAATTCTAAGAGGAATTTAAGTTTGTTACACAGGTGTAGTAGTGGGGACATGGTACAAGATTCCCAGGCTGTTGAACAAGGTGATGGGCCTATGATTAGCTTGGAAGAAGGTTCTAGCTTGGTTGATAAAGAAGGTGAAATACATGTTGTTTCTAATGACCACATTTTGGCTCCGAGAAATGAAGAACCAGAGCAGGAATTTGTTTCAGAAATTTTCACTTCAGAAATACCAAGAATAGCAACATCATTAACAAACTCGCAAACAGTTGAAAAGCCAACATCCTCAAATGCTTTGGTGGACACACAGATTAGTGAACCGTGTCTGATGAACCAGAAAAAACCACTTGGTGAAATTCCTAAGAGTATTGATCAAGTTGCTGTAGAGGAAACCATAGCAAAGAACACCAATATGGCAGCTTCATCAATTCTTTCCGAATCCGCCACCTCTAAGTTGGATACATCAGTTACTTTACAACGTAAATCGCATCCACATAGTGAAATTAGGAGCAGCCAAAATGAGGTACGCATTACTAAAGAAAGTGAAGGCCATCCTGAACTCATTCAAGACTTTGGGAGCAATGATATGATACCAATTGCTTTGGGGAAAGAGGGTGAAGATAATATAGTTGTAAAGACCCTTTTTGAGCTTGAAAACTATCTCAAGATGTCTCTCAAGGACATAGTTAGTTCTGAGACTAACACCCTTCGTCTTTTTTCTACTCTTAATTTTCTGTCCAACCTTCCTTTCAAAGATGTCACTCTAACTGATCAACTCAAACACATTATAGAGACTATGCACCAACACTTCCCAACCATTCTATGCTCCTTTAAGCAACGCTTTGCTACCACTCACAAGTTGGCAGAACTTGAAGCTCGTCAGAATGAGGTGGCCGTTAAAATTTCTGAGGCAGAGAATTTCAATGATGAAGCTCGACTGAAGGAAGTGGTTTTGAAGGAAGAAATCATTAGGTTGAAGGAAGAAATAAAAGTTTGTGAGGCTACCTTATCATCTCTGAATGAGGGAAAAAATAAATGCATTGTGGAAACTATAAAGTACAAAAAGGAGCTTGAAAATGTGAGAAAAAACAAATCTCAAATGGTGGAAGATCAAAGAAAAGTTGAGCAAGAATTGTTTGAAATGGCTTATAAATGGTCAGTTCTCTGTAGTGAATATGAGCTCAATCGGATTGCTGCAAGAAATCCCTCCTGA	5838	0.3679	MECLLGFASSVSRDLVCGALNQLRYPCCFKNFVKGLEEEESNLIITKDSVQKFVTHNKKQARKPSEIVDKWLEDAINDVHNVNQLLEEARTKKHCCFGHCPNWILRYHVGKKLANKTMDLEKFIEKGRKYVPFDRIATLPSNTLDMLSEKCMNFESRQYAYEQLLDAVKNNDVSMIGLYGMGGCGKTTLAMEVRKLVEAEHLFEKVLFIAVSSTVEVRRIQEKIASSLQFEFPETEEMQRAQRLCSRLTQEKNIFIILDDVWEKLDFGRIGIPSSEHHKGCKILITTRSEAVCTLMDCQRKIYLPILTDEEAWTLFQNKALISEGTPHTLKNLGRLISNECKGLPVAIAAVACSLKGKAETVWSVALNKLRRSKPINIERGLIDPYKCLQLSYDNLDTKEAKSLFLLCSVFPEDSEIQVEILTRCAIGLGVVGEVDSYEEARSEVIAAKIKLVSCCLLLDADNERVKMHDIVRDVAHIIAQNENKKIKCEVEIDVTVEQNSVRYLWCSKFPNDLDCSNLEFLCLHTIMKGFEGIFKRMGKLKVLLLCNDEDEKTPLSTTSLKTLTNLRDLFISNFELSDFSFLSGTKNLQTLSLYDCSLPSFPELQTDVAITLKLLELNECYIKVKNFEVMKRIPLLEELYIIEIEGEWDANSEDNIEFFKTFSVPQTLQRYGIVLGSDNFYHYNDGDIYIDGRTLLLNHFDISNEVIKGLAKKAKDLFVRNIDGGAKNMIPDIFEIEGGGLNELNTLEIRDSAGIKILIDTRSHSSEVVTLFSKLHTLEMKRMENLKAIWHCFLPTNGPFENLENLYLSNCPRLTFLFTYAVARNLVKLKILKISRCDELKHILTYDEKSQDEFTTGHPLQIFQNLLDVKIKRCRELKHIFPANIVGGLTQLKVLEIRECDKLDQIIGDIVPLTKQHRKEELDEIVEEASKAKTLTSLEELFIHWCKSLKDIVTHEKVNKNQEESIVEDDHISECDSLEVVFPKSYIWADPKNSLTLQHLTTLTIWKCGNMEVIFPKSVVRCLPELKKVTIRECMELKQIIEEDGSNLLSIDGGSEVEEIIGCDKEASKNYFAFPNLEKLEIIECVKLEVVFPKSVLRCLPKLKLLKIIQCKELSQIIEGDINLSNILSPQPCFPKLEALHVDDCHKLKRFFSGSASNDLPNLHLLAINGTYELEELVGCKQGMTKVELPRLKLLIFMHLPNFRQEIELHNLKNCIVYKCPKLSLTSTTSLEKLLEDFPHKDFINTELGPSELKGIVRSVSEYSTINGSSEFTSSQEIEVVGNENIKEGSLVEGSKTKSSSTTGVEDIGIGSGVEDIGIYEDATSGSSELTSSQEIEDVGNESIKSSSTGVEDIGIGDAVATHIESGGEDILALDSKVVEQDDKMNEGKPRIVAGQRIQVEEGLNLLHKQEGIDVVPNNNIDISSDIRTRLGAYKHFVDMDDAQISLLVEAITTYPHLWNASKKFSERFQAWRLKILADMLLFLQKESVDSIIPQREKEFHKLCEEAIEVGFESSWVEEMRQRVVARDPKLEEDIAKRQIHENSKRNLSLLHRCSSGDMVQDSQAVEQGDGPMISLEEGSSLVDKEGEIHVVSNDHILAPRNEEPEQEFVSEIFTSEIPRIATSLTNSQTVEKPTSSNALVDTQISEPCLMNQKKPLGEIPKSIDQVAVEETIAKNTNMAASSILSESATSKLDTSVTLQRKSHPHSEIRSSQNEVRITKESEGHPELIQDFGSNDMIPIALGKEGEDNIVVKTLFELENYLKMSLKDIVSSETNTLRLFSTLNFLSNLPFKDVTLTDQLKHIIETMHQHFPTILCSFKQRFATTHKLAELEARQNEVAVKISEAENFNDEARLKEVVLKEEIIRLKEEIKVCEATLSSLNEGKNKCIVETIKYKKELENVRKNKSQMVEDQRKVEQELFEMAYKWSVLCSEYELNRIAARNPS	1945

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu7g00351	1945	PANTHER	NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED	1061	1231	-	-
	Vimu7g00351	1945	MobiDBLite	consensus disorder prediction	1698	1719	-	-
	Vimu7g00351	1945	Pfam	NB-ARC domain	162	394	IPR002182	GO:0043531
	Vimu7g00351	1945	Gene3D	-	142	303	IPR027417	-
	Vimu7g00351	1945	Gene3D	Ribonuclease Inhibitor	919	1245	IPR032675	-
	Vimu7g00351	1945	Coils	Coil	1899	1919	-	-
	Vimu7g00351	1945	Coils	Coil	72	92	-	-
	Vimu7g00351	1945	FunFam	Probable disease resistance protein At1g61300	148	301	-	-
	Vimu7g00351	1945	Coils	Coil	1850	1870	-	-
	Vimu7g00351	1945	SUPERFAMILY	RNI-like	764	952	-	-
	Vimu7g00351	1945	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	151	408	IPR027417	-
	Vimu7g00351	1945	Gene3D	-	306	397	IPR042197	-
	Vimu7g00351	1945	PRINTS	Disease resistance protein signature	175	190	-	-
	Vimu7g00351	1945	PRINTS	Disease resistance protein signature	825	841	-	-
	Vimu7g00351	1945	PRINTS	Disease resistance protein signature	248	262	-	-
	Vimu7g00351	1945	PRINTS	Disease resistance protein signature	341	355	-	-
	Vimu7g00351	1945	MobiDBLite	consensus disorder prediction	1700	1719	-	-
	Vimu7g00351	1945	SUPERFAMILY	L domain-like	467	1180	-	-
	Vimu7g00351	1945	Gene3D	Ribonuclease Inhibitor	494	917	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu7g00351	Vimu-Chr7	4044710	4053544	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu7g00351	172	646	WRKY Transcription Factor Family	AT5G45050	24.178	8.25e-09	58.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu7g00351	-		-	vra:106752470	2386.68