Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00315 ATGTCAGGTGAAGAGGTAGCTGTTGCAGCTGAGGCACCTGCTTCCATTCCCGGTGAGCCCATGGACATCATGACTGCTTTACAGCTTGTGCTGAGAAAATCTCTGGCTTACGGTGGTCTTGCAAGAGGTCTTCATGAAAGTGCCAAGATCATTGAGAAGCATGCTGCACAGCTCTGTGTTCTAGCAGAAGACTGTGACCAGCCTGATTATGTGAAACTGGTGAAGGCCCTTTGCGCCGAGCACAATGTTAGCCTTTTGACAGTTCCAAGTGCAAAGACCCTTGGAGAATGGGCTGGTGTAAGTGCCTTAGAGACTCCTAACCATTTTTGCTTAAATTCCTTGTACCATTCTTTTACTCTCAATTCCCAAATTCAGTTGGTGAATGTTCATAAGGATTTTATTCTTATAATATTTTTTGTTGAATAA 426 0.439 MSGEEVAVAAEAPASIPGEPMDIMTALQLVLRKSLAYGGLARGLHESAKIIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGVSALETPNHFCLNSLYHSFTLNSQIQLVNVHKDFILIIFFVE 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00315 141 Gene3D - 5 126 IPR029064 -
Vimu7g00315 141 PANTHER 40S RIBOSOMAL PROTEIN S12 16 103 - -
Vimu7g00315 141 PRINTS Ribosomal protein S12E family signature 44 60 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vimu7g00315 141 PRINTS Ribosomal protein S12E family signature 30 43 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vimu7g00315 141 PRINTS Ribosomal protein S12E family signature 85 106 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vimu7g00315 141 SUPERFAMILY L30e-like 20 101 IPR029064 -
Vimu7g00315 141 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 26 101 IPR004038 -
Vimu7g00315 141 ProSitePatterns Ribosomal protein S12e signature. 26 44 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vimu7g00315 141 FunFam 40S ribosomal protein S12 6 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00315 Vimu-Chr7 3789465 3790668 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00315 16 108 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 70.968 7.70e-45 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00315 K02951 - gmx:100500093 187.963