Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00302 ATGATGATGATGATGATGACGCCAAACTTGAACCTGGAACCTGAAGAAGATTTCAACATCTGCAGCCAAGTTGGATCAAATGAATTGCTGCAAGAAACAACACAAGATTTTTTGGACAACGGCAGCTCCTCCTGTCTCACAAAGACTGATCCTGATTCAGGTTCTCTCTCCCTTGACTTGACCCTCAAATTCAATCACAGTGATGAAGAGTTCAAAGGTGAAAGTCACACCAACAGTGAAGTAGGAGGTGAAATTCATCCCCCAGCACTAGCAGTTCCCAGAGTTTTCTCCTGTAACTATTGCCGGAGGAAATTCTTCAGCTCGCAGGCATTAGGTGGCCATCAGAATGCTCACAAAAGGGAGAGGACAATGGCAAAGCGTGCACTGAGAATGGGGATTCTCACTGAAAGGTACACAAGCTTAGCATCTCTGCCTCTGCATGGTTCTTCTTGTCGGTCACTTGGCCTTGAAGCTCATGCTTCAATACACCAAGGACAAGTAGTGCAGTCACTGAGGGTTCCTGAAATAGGAGCTGGTGCAAAATTCGAAAAAGACTATTTTCGGACACCGATCTTCGTGGAAGATGATGATGTTGGTCTGTTTTGGCCTGGCAGCTTCAGAAAGAAAGAAGGAAGGGGTGATTTTGGTGTTGATCTGAGGCATGATGCAGATGCTTTCAATTCAAGTACTAGGTTTGTAGCAACTGCACCTCCGGCACAAACATCTGCAACTCCTGATCTCACTCTGAGGCTCTGA 756 0.459 MMMMMMTPNLNLEPEEDFNICSQVGSNELLQETTQDFLDNGSSSCLTKTDPDSGSLSLDLTLKFNHSDEEFKGESHTNSEVGGEIHPPALAVPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRALRMGILTERYTSLASLPLHGSSCRSLGLEAHASIHQGQVVQSLRVPEIGAGAKFEKDYFRTPIFVEDDDVGLFWPGSFRKKEGRGDFGVDLRHDADAFNSSTRFVATAPPAQTSATPDLTLRL 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00302 251 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Vimu7g00302 251 Gene3D Classic Zinc Finger 92 143 - -
Vimu7g00302 251 SUPERFAMILY beta-beta-alpha zinc fingers 94 124 IPR036236 -
Vimu7g00302 251 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Vimu7g00302 251 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 55 165 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00302 Vimu-Chr7 3676720 3677475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00302 94 251 C2H2 Transcription Factor Family AT1G66140 43.956 1.14e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu7g00302 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00302 - - gmx:100777133 335.88